BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0130000 Os08g0130000|Os08g0130000
         (467 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0130000  Putative DNA binding domain containing protein      744   0.0  

>Os08g0130000 Putative DNA binding domain containing protein
          Length = 467

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/467 (81%), Positives = 381/467 (81%)

Query: 1   MAAAAGAGEPSPYAEAAGSDLANARAPSPVVGKHLPSGAVPRHAYVFDGEGGFXXXXXXX 60
           MAAAAGAGEPSPYAEAAGSDLANARAPSPVVGKHLPSGAVPRHAYVFDGEGGF       
Sbjct: 1   MAAAAGAGEPSPYAEAAGSDLANARAPSPVVGKHLPSGAVPRHAYVFDGEGGFADAAWDV 60

Query: 61  XXXXXXXFTWHHIELPRQQPGGAAAKPLHHAQALIELLCPPLTLQEILAFVATGPHCGVV 120
                  FTWHHIELPRQQPGGAAAKPLHHAQALIELLCPPLTLQEILAFVATGPHCGVV
Sbjct: 61  AAAAPGAFTWHHIELPRQQPGGAAAKPLHHAQALIELLCPPLTLQEILAFVATGPHCGVV 120

Query: 121 DXXXXXXXXXXXXRVSSPGPVGSAFALRLAARXXXXXXXXXXXXXXPRLAFGTTQASLLS 180
           D            RVSSPGPVGSAFALRLAAR              PRLAFGTTQASLLS
Sbjct: 121 DGGGGGGAGALLLRVSSPGPVGSAFALRLAARVTDSSVVTVSVGGVPRLAFGTTQASLLS 180

Query: 181 EVPLGVTASLSDXXXXXXXXXXXXXXXXXRLLESLLAMNHADGAHTDNPVPRTVSNLLVH 240
           EVPLGVTASLSD                 RLLESLLAMNHADGAHTDNPVPRTVSNLLVH
Sbjct: 181 EVPLGVTASLSDEGHGGGRAVEGGVVIEERLLESLLAMNHADGAHTDNPVPRTVSNLLVH 240

Query: 241 VLGTHVDHVHDIVTRLEMELDSIELHLDKGGHFMRKLLLDGRRFPKMHLDLQRLLQVVSH 300
           VLGTHVDHVHDIVTRLEMELDSIELHLDKGGHFMRKLLLDGRRFPKMHLDLQRLLQVVSH
Sbjct: 241 VLGTHVDHVHDIVTRLEMELDSIELHLDKGGHFMRKLLLDGRRFPKMHLDLQRLLQVVSH 300

Query: 301 GDQVFPRVKEKCASKSWFASEDIVALEDLIGRLRRLKENLGFITNRVTTLQASLDSWQSE 360
           GDQVFPRVKEKCASKSWFASEDIVALEDLIGRLRRLKENLGFITNRVTTLQASLDSWQSE
Sbjct: 301 GDQVFPRVKEKCASKSWFASEDIVALEDLIGRLRRLKENLGFITNRVTTLQASLDSWQSE 360

Query: 361 QINKSLYYXXXXXXXXXXXXXVTGVFGMNVGGVPWTEQKNPANLDGFFNVMXXXXXXXXX 420
           QINKSLYY             VTGVFGMNVGGVPWTEQKNPANLDGFFNVM         
Sbjct: 361 QINKSLYYLSFLSIIFLPLSIVTGVFGMNVGGVPWTEQKNPANLDGFFNVMLICVVILLI 420

Query: 421 XXXXXXXPSLYSHVSAWRTRRALARSSSQNKRHLKLFKGHKDGYMRL 467
                  PSLYSHVSAWRTRRALARSSSQNKRHLKLFKGHKDGYMRL
Sbjct: 421 LLLCFLFPSLYSHVSAWRTRRALARSSSQNKRHLKLFKGHKDGYMRL 467



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,853,796
Number of extensions: 521746
Number of successful extensions: 1479
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1477
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 363
Effective length of database: 11,605,545
Effective search space: 4212812835
Effective search space used: 4212812835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)