BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0130000 Os08g0130000|Os08g0130000
         (467 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04305.1  | chr2:1501679-1503448 REVERSE LENGTH=435            379   e-105

>AT2G04305.1 | chr2:1501679-1503448 REVERSE LENGTH=435
          Length = 434

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/447 (45%), Positives = 258/447 (57%), Gaps = 38/447 (8%)

Query: 24  ARAPSPVVGKHLPSGAVPRHAYVFDGEGGFXXXXXXXXXXXXXXFTWHHIELPRQQPGGA 83
           +R  S     H  SG V + AY+FDG+G +              F W+H+ELP+      
Sbjct: 23  SRDASHRFSSHQFSGMVRQRAYIFDGDGKYYNKEWDLAEGTGKEFCWYHVELPK-----G 77

Query: 84  AAKPLHHAQALIELLCPPLTLQEILAFVATGPHCGVVDXXXXXXXXXXXXRVSSPGPVGS 143
             K    AQ LI+ LCPPL LQ+ILA  + GP CG VD            RV+SPGP  S
Sbjct: 78  NQKLSQSAQHLIDALCPPLKLQDILALASNGPFCGHVDGALVF-------RVNSPGPASS 130

Query: 144 AFALRLAARXXXXXXXXXXXXXXPRLAFGTTQASLLSEVPLGVTASLSDXXXXXXXXXXX 203
           +   ++AAR              PRL F     SLLSEVP  +                 
Sbjct: 131 SNTFKIAARITENSVITVSLGRVPRLGFSPMGQSLLSEVPSVIEE--------------- 175

Query: 204 XXXXXXRLLESLLAMNHADGAHTDNPVPRTVSNLLVHVLGTHVDHVHDIVTRLEMELDSI 263
                  +LE LL MNH++ A  DNPVP +VSNL+VH++ THVD + D+VT LE+ELD +
Sbjct: 176 ------HVLEFLLKMNHSEEA--DNPVPTSVSNLVVHIIDTHVDRLQDVVTELEIELDGV 227

Query: 264 ELHLDKGGHFMRKLLLDGRRFPKMHLDLQRLLQVVSHGDQVFPRVKEKCASKSWFASEDI 323
           EL +D+GG  M+K +LD RRFPK+HL+LQRLLQV++HG+QVFPRVKEKC++K WF +EDI
Sbjct: 228 ELEMDRGGFAMKKKMLDDRRFPKLHLNLQRLLQVIAHGEQVFPRVKEKCSTKPWFLAEDI 287

Query: 324 VALEDLIGRLRRLKENLGFITNRVTTLQASLDSWQSEQINKSLYYXXXXXXXXXXXXXVT 383
            +LE+LIGRLRRLKEN+GFI NRVT +QA LDSWQ+EQIN+ LYY             +T
Sbjct: 288 HSLEELIGRLRRLKENVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIIT 347

Query: 384 GVFGMNVGGVPWTEQKNPANLDGFFNVMXXXXXXXXXXXXXXXXPSLYSHVSAWRTRRAL 443
           GVFGMNVGGVPWT Q  P   DGF NVM                P+LYS +++W   R +
Sbjct: 348 GVFGMNVGGVPWTGQDKPELRDGFRNVMYICLIMLVLVLCCFGFPALYSRIASWWGTRDM 407

Query: 444 ARSSSQNKRHLKLFKG---HKDGYMRL 467
            RS S N+R  K        + GY+RL
Sbjct: 408 KRSWSLNRRSFKKIPNIVQERKGYLRL 434



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,177,511
Number of extensions: 285661
Number of successful extensions: 613
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 365
Effective length of database: 8,310,137
Effective search space: 3033200005
Effective search space used: 3033200005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)