Os08g0107100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0107100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.94 | 0.253 | 11.5 | 1.89 | 0.434 | -1.11 | 0.0702 | 1.88 | 0.521 | 2.52 | 21.2 | 708 | -- | -- |
| 31.08 | 0.26 | 11.6 | 1.52 | 0.555 | -1.02 | 0.101 | -- | 0.415 | 3.21 | 18.27 | 849 | -- | -- |
| 28.96 | 0.251 | 11.5 | 1.89 | 0.434 | -1.11 | -- | 1.88 | 0.521 | 2.53 | 21.2 | 707 | -- | -- |
| 31.1 | 0.26 | 11.6 | 1.51 | 0.553 | -1.01 | -- | -- | 0.415 | 3.28 | 18.28 | 849 | -- | -- |
| 30.84 | 0.259 | 11.5 | 1.83 | -- | -1.28 | -- | 1.86 | 0.53 | -- | 21.34 | 325 | -- | -- |
| 50.59 | 0.333 | 11.6 | 1.21 | 0.585 | -- | -0.072 | -- | 0.227 | 4.98 | -- | -- | -- | -- |
| 50.61 | 0.333 | 11.6 | 1.21 | 0.584 | -- | -- | -- | 0.228 | 4.97 | -- | -- | -- | -- |
| 32.93 | 0.267 | 11.6 | 1.48 | -- | -1.18 | -- | -- | 0.432 | -- | 20.55 | 271 | -- | -- |
| 82.83 | 0.424 | 11.6 | -- | 0.369 | -0.576 | -- | -- | 0.175 | 4.66 | 21.7 | 332 | -- | -- |
| 68.56 | 0.387 | 11.6 | 1.23 | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
| 89.29 | 0.442 | 11.6 | -- | 0.606 | -- | -- | -- | 0.0927 | 4.9 | -- | -- | -- | -- |
| 87.53 | 0.436 | 11.6 | -- | -- | -0.855 | -- | -- | 0.2 | -- | 23.15 | 268 | -- | -- |
| 108.65 | 0.487 | 11.7 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 2 | 28.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 8 | 28.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 16 | 28.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 17 | 28.46 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 39 | 28.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 62 | 28.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 80 | 28.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 181 | 29.26 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 198 | 29.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 215 | 29.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 265 | 29.45 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 345 | 29.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 346 | 29.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 351 | 29.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 385 | 29.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 398 | 29.78 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 410 | 29.81 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 419 | 29.84 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 459 | 29.96 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 477 | 30.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 557 | 30.14 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 562 | 30.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 670 | 30.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 744 | 30.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 987 | 30.64 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 990 | 30.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |