BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0107100 Os08g0107100|AK065087
(337 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19950.1 | chr4:10809977-10810942 FORWARD LENGTH=322 91 8e-19
AT1G31130.1 | chr1:11114963-11115928 REVERSE LENGTH=322 80 2e-15
AT5G44860.1 | chr5:18110688-18111653 REVERSE LENGTH=322 63 2e-10
>AT4G19950.1 | chr4:10809977-10810942 FORWARD LENGTH=322
Length = 321
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 196 VYLSVVWHLASVVSVLEDYKGFEAMRKSKALIQGKLWTASAIXXXXXXXXXXXXXXXRAW 255
VY++ +WHLASVVSVLE G AM+KS L++GK A ++ A
Sbjct: 182 VYMTALWHLASVVSVLEPIYGLAAMKKSYELLKGKTLMACSMVFIYLVHCGFIAGVFGAV 241
Query: 256 VVRGATHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLVCKSYHHESIDKSNLSDHL 315
VVRG Y VCKS+HH+ IDKS L DHL
Sbjct: 242 VVRGGDDYGIFARIVAGGFLVGVLVIVNLIGLLVQSVFYY-VCKSFHHQEIDKSALHDHL 300
Query: 316 EVYLGEYVPLKASDVQMEQF 335
YLGEYVPLK S++QME F
Sbjct: 301 GGYLGEYVPLK-SNIQMENF 319
>AT1G31130.1 | chr1:11114963-11115928 REVERSE LENGTH=322
Length = 321
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 196 VYLSVVWHLASVVSVLEDYKGFEAMRKSKALIQGKLWTASAIXXXXXXXXXXXXXXXRAW 255
VY + +WHL SV+SVLE G AMRK+ L++GK A + A
Sbjct: 182 VYFTALWHLGSVISVLEPVYGIAAMRKAYELLKGKTKMAMGLIFVYLFLCGLIGVVFGAV 241
Query: 256 VVRGATHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLVCKSYHHESIDKSNLSDHL 315
VV G Y VCKSYHH++IDK+ L D L
Sbjct: 242 VVHGGGKYGTFTRTLVGGLLVGVLVMVNLVGLLVQSVFYY-VCKSYHHQTIDKTALYDQL 300
Query: 316 EVYLGEYVPLKASDVQMEQFNL 337
YLG+YVPLK S++Q+E ++
Sbjct: 301 GGYLGDYVPLK-SNIQLEDLDI 321
>AT5G44860.1 | chr5:18110688-18111653 REVERSE LENGTH=322
Length = 321
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 295 YLVCKSYHHESIDKSNLSDHLEVYLGEYVPLKASDVQMEQFNL 337
Y VCKS+HH+ IDKS L DHL YLG+YVPLK+S +QME F++
Sbjct: 280 YYVCKSFHHQPIDKSALHDHLGGYLGDYVPLKSS-IQMENFDI 321
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,349,594
Number of extensions: 58670
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 238
Effective length of database: 8,392,385
Effective search space: 1997387630
Effective search space used: 1997387630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)