BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0107100 Os08g0107100|AK065087
         (337 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0107100  Conserved hypothetical protein                      279   2e-75
Os11g0108866                                                       72   5e-13

>Os08g0107100 Conserved hypothetical protein
          Length = 337

 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/337 (50%), Positives = 169/337 (50%)

Query: 1   MECEPEELQFLGMVGIYREAASILRAHRPLFARIXXXXXXXXXXXXXXXXXXXXXXFSHI 60
           MECEPEELQFLGMVGIYREAASILRAHRPLFARI                      FSHI
Sbjct: 1   MECEPEELQFLGMVGIYREAASILRAHRPLFARIAAAFVLPLSLLFLLHIAISHALFSHI 60

Query: 61  XXXXXXXXXXXPGTPAQRRLLHRLADDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                      PGTPAQRRLLHRLADDW                                
Sbjct: 61  DSDDSALDSAAPGTPAQRRLLHRLADDWLALLLFKAAYLLALLLFSLLSTAAAVFSVASV 120

Query: 121 XXXXHDALSFPRVLSVVPRVWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
               HDALSFPRVLSVVPRVWRR                                     
Sbjct: 121 YSAKHDALSFPRVLSVVPRVWRRLAATFLAAFLLLFAYHLLFVAVFVALLVAADSGSGLA 180

Query: 181 XXXXXXXXXXXXXXXVYLSVVWHLASVVSVLEDYKGFEAMRKSKALIQGKLWTASAIXXX 240
                          VYLSVVWHLASVVSVLEDYKGFEAMRKSKALIQGKLWTASAI   
Sbjct: 181 ALLAFLLALAYIAGLVYLSVVWHLASVVSVLEDYKGFEAMRKSKALIQGKLWTASAIFFV 240

Query: 241 XXXXXXXXXXXXRAWVVRGATHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLVCKS 300
                       RAWVVRGATH                                YLVCKS
Sbjct: 241 LNVVFIVVEVAFRAWVVRGATHGLGAGSRLLLGLAMLAALCAVVMLALVVQTVVYLVCKS 300

Query: 301 YHHESIDKSNLSDHLEVYLGEYVPLKASDVQMEQFNL 337
           YHHESIDKSNLSDHLEVYLGEYVPLKASDVQMEQFNL
Sbjct: 301 YHHESIDKSNLSDHLEVYLGEYVPLKASDVQMEQFNL 337



>Os11g0108866 
          Length = 108

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/34 (97%), Positives = 34/34 (100%)

Query: 1  MECEPEELQFLGMVGIYREAASILRAHRPLFARI 34
          MECEPEELQFLG+VGIYREAASILRAHRPLFARI
Sbjct: 1  MECEPEELQFLGVVGIYREAASILRAHRPLFARI 34



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,302,733
Number of extensions: 90076
Number of successful extensions: 257
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 236
Effective length of database: 11,762,187
Effective search space: 2775876132
Effective search space used: 2775876132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)