Os08g0102100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nicastrin family protein.
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Os08g0102100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nicastrin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.04 | 0.2 | 11.2 | 0.559 | 0.0532 | 0.308 | -0.363 | -0.735 | 0.268 | 22.2 | 91.77 | 643 | -- | -- |
| 18.75 | 0.202 | 11.2 | 0.507 | 0.0884 | 0.375 | -0.0107 | -- | 0.275 | 20.2 | 92.18 | 643 | -- | -- |
| 18.35 | 0.199 | 11.2 | 0.547 | 0.0847 | 0.354 | -- | -0.447 | 0.273 | 20.9 | 91.7 | 643 | -- | -- |
| 18.74 | 0.202 | 11.2 | 0.512 | 0.0926 | 0.363 | -- | -- | 0.271 | 20.1 | 91.9 | 643 | -- | -- |
| 18.61 | 0.201 | 11.2 | 0.55 | -- | 0.286 | -- | -0.414 | 0.253 | -- | 92 | 627 | -- | -- |
| 20.43 | 0.212 | 11.2 | 0.519 | 0.00641 | -- | 0.188 | -- | 0.207 | 13.8 | -- | -- | -- | -- |
| 20.56 | 0.212 | 11.2 | 0.525 | 0.0129 | -- | -- | -- | 0.208 | 9.49 | -- | -- | -- | -- |
| 19.05 | 0.203 | 11.2 | 0.51 | -- | 0.297 | -- | -- | 0.255 | -- | 92.44 | 673 | -- | -- |
| 25.29 | 0.234 | 11.2 | -- | 0.123 | 0.413 | -- | -- | 0.224 | 20.5 | 90.59 | 647 | -- | -- |
| 20.57 | 0.212 | 11.2 | 0.525 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 27.82 | 0.247 | 11.2 | -- | 0.016 | -- | -- | -- | 0.15 | 6.81 | -- | -- | -- | -- |
| 25.78 | 0.236 | 11.2 | -- | -- | 0.315 | -- | -- | 0.198 | -- | 91.17 | 746 | -- | -- |
| 27.83 | 0.246 | 11.2 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.48 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 2 | 17.84 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 3 | 17.85 | radiation | 30 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 9 | 17.92 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 18 | 17.98 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 22 | 17.99 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 24 | 17.99 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 27 | 18.01 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 33 | 18.02 | radiation | 20 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 40 | 18.03 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 41 | 18.04 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 47 | 18.04 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 51 | 18.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 62 | 18.06 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 70 | 18.06 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 104 | 18.07 | humidity | 90 | 720 | > th | dose dependent | rect. | 4 | 22 |
| 105 | 18.08 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 151 | 18.09 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 162 | 18.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 187 | 18.11 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 344 | 18.13 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 419 | 18.15 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 447 | 18.15 | radiation | 30 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 470 | 18.16 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 471 | 18.16 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 567 | 18.17 | radiation | 30 | 43200 | > th | dose independent | sin | 7 | NA |
| 571 | 18.17 | radiation | 30 | 43200 | > th | dose independent | sin | 5 | NA |
| 574 | 18.17 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 595 | 18.17 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 640 | 18.18 | radiation | 30 | 43200 | > th | dose independent | sin | 3 | NA |
| 644 | 18.18 | radiation | 30 | 43200 | < th | dose independent | sin | 7 | NA |
| 645 | 18.18 | radiation | 30 | 43200 | < th | dose independent | sin | 5 | NA |
| 657 | 18.18 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 678 | 18.18 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 733 | 18.19 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 5 |