BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0102100 Os08g0102100|AK064841
(555 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0102100 Nicastrin family protein 919 0.0
>Os08g0102100 Nicastrin family protein
Length = 555
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/529 (87%), Positives = 461/529 (87%)
Query: 27 CVELGDAAAAVGVYRLIQYDLAGAPLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 86
CVELGDAAAAVGVYRLIQYDLAGAPLGS
Sbjct: 27 CVELGDAAAAVGVYRLIQYDLAGAPLGSRAAALNHHAAALPLPAAADLSRSALVAPLLDL 86
Query: 87 XXXXXXXXXADXXXXXXXXXXXXXXXNHEPNNEDKGQVKASXXXXXXXXXXXXVPYPVYF 146
AD NHEPNNEDKGQVKAS VPYPVYF
Sbjct: 87 PLAFLRDYLADKKYLGGLLILLPKKLNHEPNNEDKGQVKASLAELEQLLLHQQVPYPVYF 146
Query: 147 AFQDDHFDNLLADIRKIASSGQPASATTGGYKLVVSTPEPRKVASPTISNIQGWLPGLKG 206
AFQDDHFDNLLADIRKIASSGQPASATTGGYKLVVSTPEPRKVASPTISNIQGWLPGLKG
Sbjct: 147 AFQDDHFDNLLADIRKIASSGQPASATTGGYKLVVSTPEPRKVASPTISNIQGWLPGLKG 206
Query: 207 EGETEQLPTIAIVSNYDTFGAAPALSVGSDSNGSGAVALLEIARLFSRLYSNPKTRGKYN 266
EGETEQLPTIAIVSNYDTFGAAPALSVGSDSNGSGAVALLEIARLFSRLYSNPKTRGKYN
Sbjct: 207 EGETEQLPTIAIVSNYDTFGAAPALSVGSDSNGSGAVALLEIARLFSRLYSNPKTRGKYN 266
Query: 267 LLFGLTSGGPYNYNGTNKWLRSFDQRVRESIDYAICLNSVGSWDNELWMHVSKPPENPYI 326
LLFGLTSGGPYNYNGTNKWLRSFDQRVRESIDYAICLNSVGSWDNELWMHVSKPPENPYI
Sbjct: 267 LLFGLTSGGPYNYNGTNKWLRSFDQRVRESIDYAICLNSVGSWDNELWMHVSKPPENPYI 326
Query: 327 KQIFEDFSDVSKEMGVSVGIKHKKINVSNPRVAWEHEQFSRFRVTALTLSELSSPPDFLE 386
KQIFEDFSDVSKEMGVSVGIKHKKINVSNPRVAWEHEQFSRFRVTALTLSELSSPPDFLE
Sbjct: 327 KQIFEDFSDVSKEMGVSVGIKHKKINVSNPRVAWEHEQFSRFRVTALTLSELSSPPDFLE 386
Query: 387 STGGLYDTRESADAESVIRTVRLVSESLARHIYGLKGKNIDVFAENSSLAINPHYIQSWL 446
STGGLYDTRESADAESVIRTVRLVSESLARHIYGLKGKNIDVFAENSSLAINPHYIQSWL
Sbjct: 387 STGGLYDTRESADAESVIRTVRLVSESLARHIYGLKGKNIDVFAENSSLAINPHYIQSWL 446
Query: 447 DLLSRTPRVAPFLQKNDPFIAALKKELSEHTADVHVQSDVLDGMFTFYDATKATLNVYQV 506
DLLSRTPRVAPFLQKNDPFIAALKKELSEHTADVHVQSDVLDGMFTFYDATKATLNVYQV
Sbjct: 447 DLLSRTPRVAPFLQKNDPFIAALKKELSEHTADVHVQSDVLDGMFTFYDATKATLNVYQV 506
Query: 507 ASVTFDLLFLLVIGSYLIILFSFLVITTRGLDDLINIFRRPPSRKVKGA 555
ASVTFDLLFLLVIGSYLIILFSFLVITTRGLDDLINIFRRPPSRKVKGA
Sbjct: 507 ASVTFDLLFLLVIGSYLIILFSFLVITTRGLDDLINIFRRPPSRKVKGA 555
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,135,753
Number of extensions: 645638
Number of successful extensions: 1426
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1426
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 449
Effective length of database: 11,501,117
Effective search space: 5164001533
Effective search space used: 5164001533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)