BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0102100 Os08g0102100|AK064841
         (555 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44330.1  | chr3:16006754-16010671 FORWARD LENGTH=566          645   0.0  

>AT3G44330.1 | chr3:16006754-16010671 FORWARD LENGTH=566
          Length = 565

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/414 (73%), Positives = 368/414 (88%)

Query: 140 VPYPVYFAFQDDHFDNLLADIRKIASSGQPASATTGGYKLVVSTPEPRKVASPTISNIQG 199
           +P+PVYFAF+++  D +LAD++K  + GQ A+ATTGGYKLV+S  EPRK+ASPTI+NIQG
Sbjct: 150 IPFPVYFAFENEETDAMLADVKKNDALGQQATATTGGYKLVISVSEPRKIASPTITNIQG 209

Query: 200 WLPGLKGEGETEQLPTIAIVSNYDTFGAAPALSVGSDSNGSGAVALLEIARLFSRLYSNP 259
           WLPGL+ EG++ QLPTIA+V++YDTFGAAPALSVGSDSNGSG VALLE+ARLFS LYSNP
Sbjct: 210 WLPGLRAEGDSSQLPTIAVVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSVLYSNP 269

Query: 260 KTRGKYNLLFGLTSGGPYNYNGTNKWLRSFDQRVRESIDYAICLNSVGSWDNELWMHVSK 319
           KTRGKYNLLF LTSGGPYNY GT KWL+S DQR+RESIDYAICLNSVGSWD+EL +HVSK
Sbjct: 270 KTRGKYNLLFALTSGGPYNYEGTQKWLKSLDQRMRESIDYAICLNSVGSWDSELLIHVSK 329

Query: 320 PPENPYIKQIFEDFSDVSKEMGVSVGIKHKKINVSNPRVAWEHEQFSRFRVTALTLSELS 379
           PP+N YIKQIFE FS+V++++G  V +KHKKIN+SN RVAWEHEQFSR RVTA TLSELS
Sbjct: 330 PPDNAYIKQIFEGFSNVAEDLGFQVALKHKKINISNSRVAWEHEQFSRLRVTAATLSELS 389

Query: 380 SPPDFLESTGGLYDTRESADAESVIRTVRLVSESLARHIYGLKGKNIDVFAENSSLAINP 439
           +PP+ LE+ G L DTR+  + +++I+ V+LV+ESLA+HIYG +GK+I +FA++SSLA+NP
Sbjct: 390 TPPELLENAGSLSDTRQLVNEDAIIKGVKLVAESLAKHIYGHQGKDIKIFADDSSLAVNP 449

Query: 440 HYIQSWLDLLSRTPRVAPFLQKNDPFIAALKKELSEHTADVHVQSDVLDGMFTFYDATKA 499
            Y++SWLDLLS+TPRVAPFL KN+P I ALKKEL ++TA+V VQ + LDG FTFYD+TKA
Sbjct: 450 FYVRSWLDLLSQTPRVAPFLSKNEPLIMALKKELEDYTAEVSVQHESLDGSFTFYDSTKA 509

Query: 500 TLNVYQVASVTFDLLFLLVIGSYLIILFSFLVITTRGLDDLINIFRRPPSRKVK 553
           +LN+YQVASVTFDLL LLV+GSYLI+LFSFLVITTRGLDDLI++FRRPPSRKVK
Sbjct: 510 SLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVK 563



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,231,666
Number of extensions: 412963
Number of successful extensions: 961
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 451
Effective length of database: 8,255,305
Effective search space: 3723142555
Effective search space used: 3723142555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)