Os08g0100400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RINGv domain containing protein.
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Os08g0100400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RINGv domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.85 | 0.281 | 10.1 | 2.03 | 0.374 | -0.588 | -0.282 | 2.08 | 0.592 | 0.495 | 25.58 | 1332 | -- | -- |
| 37.25 | 0.284 | 10.2 | 1.51 | 0.387 | -0.413 | -0.253 | -- | 0.457 | 0.191 | 25.79 | 1230 | -- | -- |
| 36.19 | 0.28 | 10.1 | 2.04 | 0.37 | -0.587 | -- | 2.05 | 0.588 | 0.47 | 25.7 | 1351 | -- | -- |
| 37.28 | 0.284 | 10.2 | 1.49 | 0.387 | -0.389 | -- | -- | 0.449 | 0.435 | 26.22 | 1241 | -- | -- |
| 43.35 | 0.307 | 10.1 | 2.03 | -- | -0.595 | -- | 2.2 | 0.595 | -- | 25.7 | 1602 | -- | -- |
| 43 | 0.307 | 10.2 | 1.36 | 0.323 | -- | -0.28 | -- | 0.426 | 0.348 | -- | -- | -- | -- |
| 43.34 | 0.308 | 10.2 | 1.37 | 0.324 | -- | -- | -- | 0.428 | 0.28 | -- | -- | -- | -- |
| 44.48 | 0.311 | 10.2 | 1.51 | -- | -0.356 | -- | -- | 0.531 | -- | 26.4 | 7415 | -- | -- |
| 91.73 | 0.446 | 10.3 | -- | 0.366 | -0.191 | -- | -- | 0.259 | 0.168 | 30.2 | 917 | -- | -- |
| 49.93 | 0.33 | 10.2 | 1.38 | -- | -- | -- | -- | 0.433 | -- | -- | -- | -- | -- |
| 92.53 | 0.45 | 10.2 | -- | 0.343 | -- | -- | -- | 0.276 | 0.491 | -- | -- | -- | -- |
| 69.04 | 0.387 | 10.3 | -- | -- | 0.892 | -- | -- | 0.0122 | -- | 10.35 | 47520 | -- | -- |
| 99.93 | 0.467 | 10.2 | -- | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 23 | 34.59 | humidity | 80 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 48 | 34.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 52 | 34.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 83 | 35.03 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 89 | 35.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 112 | 35.18 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 138 | 35.32 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 146 | 35.34 | humidity | 80 | 1440 | > th | dose independent | sin | 20 | NA |
| 148 | 35.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 158 | 35.37 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 170 | 35.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 192 | 35.46 | humidity | 80 | 1440 | < th | dose independent | sin | 21 | NA |
| 208 | 35.50 | humidity | 70 | 1440 | > th | dose dependent | sin | 18 | NA |
| 218 | 35.52 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 235 | 35.54 | humidity | 60 | 1440 | > th | dose dependent | sin | 16 | NA |
| 255 | 35.55 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 267 | 35.56 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 14 |
| 328 | 35.62 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 354 | 35.65 | humidity | 90 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 365 | 35.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 403 | 35.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 451 | 35.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 481 | 35.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 485 | 35.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 488 | 35.75 | humidity | 90 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 492 | 35.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 542 | 35.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 552 | 35.79 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 566 | 35.80 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 591 | 35.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 622 | 35.83 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 626 | 35.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 691 | 35.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 716 | 35.87 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 752 | 35.89 | humidity | 90 | 1440 | < th | dose dependent | sin | 15 | NA |
| 763 | 35.89 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 869 | 35.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 919 | 35.96 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 948 | 35.97 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 955 | 35.98 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 956 | 35.98 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |