BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0100400 Os08g0100400|AK121153
(633 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34100.1 | chr4:16330590-16334864 FORWARD LENGTH=1109 136 3e-32
AT4G32670.1 | chr4:15759527-15762847 REVERSE LENGTH=861 111 9e-25
AT3G06330.1 | chr3:1917334-1919709 FORWARD LENGTH=427 63 6e-10
AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412 59 8e-09
AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495 57 2e-08
AT1G02610.1 | chr1:553181-555854 REVERSE LENGTH=222 51 2e-06
AT5G62460.1 | chr5:25075545-25077072 FORWARD LENGTH=308 49 7e-06
>AT4G34100.1 | chr4:16330590-16334864 FORWARD LENGTH=1109
Length = 1108
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 23 TMASPPPPLGSETAISPAYGXXXXXXXXXQ---CRICRVPAEAGRPLRHPCACRGSIRFV 79
ASP P + A+S A G + CRICR P +A PLR+PCAC GSI+FV
Sbjct: 35 NQASPNPFSNMDPAVSTATGSRYVDDDEDEEDVCRICRNPGDADNPLRYPCACSGSIKFV 94
Query: 80 HDDCLLRWLATRRTSHCEVCKRLISTCPLYAANAPARLPLSEFMLGLANKLMGWFFXXXX 139
H DCLL+WL CEVCK S P+YA NAP+RLP EF++G+A K
Sbjct: 95 HQDCLLQWLNHSNARQCEVCKHPFSFSPVYADNAPSRLPFQEFVVGIAMKACHVLQFFLR 154
Query: 140 XXAAMYIWEFVMPFTTLWIWRLALARSFARVRHL 173
+ +W +PF T WIWRLA R+F + L
Sbjct: 155 LSFVLSVWLLTIPFITFWIWRLAFVRTFGEAQRL 188
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 150/314 (47%), Gaps = 35/314 (11%)
Query: 307 SYTSTSSILLVGYGFIFSLGVLFTGFHTFDQYSRGEHLTIAVFFKVLTNGMYRLFSPLRR 366
S S + L VGY FI L L+ G +Y++GE LT+ F+
Sbjct: 453 SKLSDITTLAVGYMFIVFLVFLYLGIIALIRYAKGEPLTVGRFY---------------- 496
Query: 367 LPGIHVMVQMALSFLRLFFRGIINLVTVANISVNLINVIAIWPLFFGWSVDICASQLFGE 426
GI +V+ S LR F + +L+T+ ++ L+ + ++PL GW +D+C ++FG+
Sbjct: 497 --GIASIVEAVPSLLRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTVRMFGK 554
Query: 427 TIYQKLELLFASSFASTALHWLIGCIYLMLLSIFSSPLCLVLGPGVTIPFVHFSGEES-- 484
T+ +++ L S AS+ +HW++G +Y++ +SIF S L VL PGV + F+ + +
Sbjct: 555 TMSHRVQFLSISPLASSLVHWVVGIMYMLQISIFVSLLRGVLRPGV-LYFLRDPADPNYN 613
Query: 485 -LIQLFREPFYKFSLKLLPGLFVSAVDVAMVILVPVQIAGQLAPKVFPLDITYFDPPTKG 543
L +P +K + ++L + V + M++ +PV++A ++AP +FPLDI+ DP
Sbjct: 614 PFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAIRMAPSIFPLDISVSDP---- 669
Query: 544 SAFWQAPRNYAELLSGALLLRFLICNTXXXXXXXXXXXXXXXXWSATTRRVLGLLDLLIA 603
+ E+ + LL + I W LGL D L+
Sbjct: 670 ---------FTEIPADMLLFQICIPFIIEHFRLRTTIKSLLRCWFTGVGWALGLTDFLLP 720
Query: 604 WSAGDGECEDGNGS 617
+ ++GNG
Sbjct: 721 RPEDNIGQDNGNGE 734
>AT4G32670.1 | chr4:15759527-15762847 REVERSE LENGTH=861
Length = 860
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 61/96 (63%)
Query: 31 LGSETAISPAYGXXXXXXXXXQCRICRVPAEAGRPLRHPCACRGSIRFVHDDCLLRWLAT 90
+GS A++ CRIC+ P E PLRHPCACRGS++++H DCL WL
Sbjct: 11 VGSGEAVTTEEVSDINNKAVDICRICQSPEEPDNPLRHPCACRGSLKYIHSDCLFLWLNR 70
Query: 91 RRTSHCEVCKRLISTCPLYAANAPARLPLSEFMLGL 126
R+ +HCE+CKR S P+Y+ NAP RLP EF++GL
Sbjct: 71 RKRNHCEICKRSYSIVPVYSENAPERLPWHEFLMGL 106
>AT3G06330.1 | chr3:1917334-1919709 FORWARD LENGTH=427
Length = 426
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 53 CRICRVPAEAGRPLRHPCACRGSIRFVHDDCLLRWLATRRTSHCEVCKRLISTCPLYAAN 112
CRIC E G L+ C+C+G +R VH+ C ++W +T+ T C+VC++++ P+
Sbjct: 218 CRICLDVCEEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQNLPVTLVR 277
Query: 113 AP 114
P
Sbjct: 278 VP 279
>AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412
Length = 411
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 53 CRICRVPAEAGRPLRHPCACRGSIRFVHDDCLLRWLATRRTSHCEVCKRLISTCPLYAAN 112
CRIC E G L+ C+C+G +R VH+ C ++W +T+ T C+VC++ + P+
Sbjct: 203 CRICLDVCEEGNTLKMECSCKGDLRLVHEHCAIKWFSTKGTRICDVCRQEVRNLPVILLR 262
Query: 113 APA 115
P
Sbjct: 263 VPT 265
>AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495
Length = 494
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 53 CRICRVP-AEAGRPLRHPCACRGSIRFVHDDCLLRWLATRRTSHCEVCKRLISTCPL 108
CRIC V E G L+ C+C+G + H DC L+W + CEVCK+ + P+
Sbjct: 257 CRICLVELCEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQEVKNLPV 313
>AT1G02610.1 | chr1:553181-555854 REVERSE LENGTH=222
Length = 221
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 52 QCRICRVPAEAGRPLRHPCACRGSIRFVHDDCLLRWLATRRTSHCEVC 99
+CRIC EA PC+C G+I+F H DC+ RW + + CE+C
Sbjct: 19 RCRICH-EEEAESYFEAPCSCSGTIKFAHRDCIQRWCDEKGNTICEIC 65
>AT5G62460.1 | chr5:25075545-25077072 FORWARD LENGTH=308
Length = 307
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 52 QCRICRVPAEAGRPLRHPCACRGSIRFVHDDCLLRWLATRRTSHCEVCKR 101
+CRIC+ ++ + L PC+C GS+++ H C+ RW + + CE+C +
Sbjct: 77 ECRICQ-EEDSVKNLESPCSCSGSLKYAHRKCVQRWCNEKGDTTCEICHK 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.143 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,379,204
Number of extensions: 481294
Number of successful extensions: 1433
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1430
Number of HSP's successfully gapped: 8
Length of query: 633
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 528
Effective length of database: 8,227,889
Effective search space: 4344325392
Effective search space used: 4344325392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 115 (48.9 bits)