BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0100400 Os08g0100400|AK121153
         (633 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0100400  RINGv domain containing protein                    1136   0.0  

>Os08g0100400 RINGv domain containing protein
          Length = 633

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/614 (92%), Positives = 568/614 (92%)

Query: 20  EEATMASPPPPLGSETAISPAYGXXXXXXXXXQCRICRVPAEAGRPLRHPCACRGSIRFV 79
           EEATMASPPPPLGSETAISPAYG         QCRICRVPAEAGRPLRHPCACRGSIRFV
Sbjct: 20  EEATMASPPPPLGSETAISPAYGEEEEEEEEEQCRICRVPAEAGRPLRHPCACRGSIRFV 79

Query: 80  HDDCLLRWLATRRTSHCEVCKRLISTCPLYAANAPARLPLSEFMLGLANKLMGWFFXXXX 139
           HDDCLLRWLATRRTSHCEVCKRLISTCPLYAANAPARLPLSEFMLGLANKLMGWFF    
Sbjct: 80  HDDCLLRWLATRRTSHCEVCKRLISTCPLYAANAPARLPLSEFMLGLANKLMGWFFLLLS 139

Query: 140 XXAAMYIWEFVMPFTTLWIWRLALARSFARVRHLLSLRIFAHAHGHGAPLYGLMPSPDAV 199
             AAMYIWEFVMPFTTLWIWRLALARSFARVRHLLSLRIFAHAHGHGAPLYGLMPSPDAV
Sbjct: 140 LLAAMYIWEFVMPFTTLWIWRLALARSFARVRHLLSLRIFAHAHGHGAPLYGLMPSPDAV 199

Query: 200 FACVSIRRAFLRDLPHFRDLNXXXXXXXXXXXXXXXWIARLETRLDRRFGGLDSLQVIAL 259
           FACVSIRRAFLRDLPHFRDLN               WIARLETRLDRRFGGLDSLQVIAL
Sbjct: 200 FACVSIRRAFLRDLPHFRDLNPLARFAAHALAPFALWIARLETRLDRRFGGLDSLQVIAL 259

Query: 260 HTVEASLMVVLLDVMLACVFGFIPFSLGRIILFCTSCFSFGNMDRVHSYTSTSSILLVGY 319
           HTVEASLMVVLLDVMLACVFGFIPFSLGRIILFCTSCFSFGNMDRVHSYTSTSSILLVGY
Sbjct: 260 HTVEASLMVVLLDVMLACVFGFIPFSLGRIILFCTSCFSFGNMDRVHSYTSTSSILLVGY 319

Query: 320 GFIFSLGVLFTGFHTFDQYSRGEHLTIAVFFKVLTNGMYRLFSPLRRLPGIHVMVQMALS 379
           GFIFSLGVLFTGFHTFDQYSRGEHLTIAVFFKVLTNGMYRLFSPLRRLPGIHVMVQMALS
Sbjct: 320 GFIFSLGVLFTGFHTFDQYSRGEHLTIAVFFKVLTNGMYRLFSPLRRLPGIHVMVQMALS 379

Query: 380 FLRLFFRGIINLVTVANISVNLINVIAIWPLFFGWSVDICASQLFGETIYQKLELLFASS 439
           FLRLFFRGIINLVTVANISVNLINVIAIWPLFFGWSVDICASQLFGETIYQKLELLFASS
Sbjct: 380 FLRLFFRGIINLVTVANISVNLINVIAIWPLFFGWSVDICASQLFGETIYQKLELLFASS 439

Query: 440 FASTALHWLIGCIYLMLLSIFSSPLCLVLGPGVTIPFVHFSGEESLIQLFREPFYKFSLK 499
           FASTALHWLIGCIYLMLLSIFSSPLCLVLGPGVTIPFVHFSGEESLIQLFREPFYKFSLK
Sbjct: 440 FASTALHWLIGCIYLMLLSIFSSPLCLVLGPGVTIPFVHFSGEESLIQLFREPFYKFSLK 499

Query: 500 LLPGLFVSAVDVAMVILVPVQIAGQLAPKVFPLDITYFDPPTKGSAFWQAPRNYAELLSG 559
           LLPGLFVSAVDVAMVILVPVQIAGQLAPKVFPLDITYFDPPTKGSAFWQAPRNYAELLSG
Sbjct: 500 LLPGLFVSAVDVAMVILVPVQIAGQLAPKVFPLDITYFDPPTKGSAFWQAPRNYAELLSG 559

Query: 560 ALLLRFLICNTXXXXXXXXXXXXXXXXWSATTRRVLGLLDLLIAWSAGDGECEDGNGSTR 619
           ALLLRFLICNT                WSATTRRVLGLLDLLIAWSAGDGECEDGNGSTR
Sbjct: 560 ALLLRFLICNTLKYLQPGPLLQKLLLYWSATTRRVLGLLDLLIAWSAGDGECEDGNGSTR 619

Query: 620 KFHHGSTSEDEYKR 633
           KFHHGSTSEDEYKR
Sbjct: 620 KFHHGSTSEDEYKR 633



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.143    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,890,577
Number of extensions: 778414
Number of successful extensions: 2355
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2358
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 526
Effective length of database: 11,448,903
Effective search space: 6022122978
Effective search space used: 6022122978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 159 (65.9 bits)