Os07g0695900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os07g0695900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.05 | 0.262 | 10.9 | 0.0289 | 0.204 | 0.375 | -0.734 | 1.27 | 0.147 | 21.4 | 29.5 | 275 | -- | -- |
| 31.33 | 0.261 | 10.9 | 0.166 | 0.233 | 0.524 | -0.75 | -- | 0.174 | 21.1 | 29.6 | 346 | -- | -- |
| 32.76 | 0.267 | 10.9 | 0.0279 | 0.237 | 0.389 | -- | 1.35 | 0.158 | 21.7 | 29.27 | 380 | -- | -- |
| 33.2 | 0.268 | 10.9 | 0.194 | 0.247 | 0.543 | -- | -- | 0.175 | 21.7 | 29.53 | 406 | -- | -- |
| 35.39 | 0.277 | 10.9 | 0.033 | -- | 0.325 | -- | 1.25 | 0.156 | -- | 29.2 | 247 | -- | -- |
| 39.26 | 0.294 | 10.9 | 0.0946 | 0.219 | -- | -0.481 | -- | 0.168 | 23.8 | -- | -- | -- | -- |
| 39.68 | 0.295 | 10.9 | 0.111 | 0.244 | -- | -- | -- | 0.167 | 1.49 | -- | -- | -- | -- |
| 35.88 | 0.279 | 10.9 | 0.187 | -- | 0.484 | -- | -- | 0.157 | -- | 29.75 | 251 | -- | -- |
| 34.17 | 0.272 | 10.9 | -- | 0.241 | 0.508 | -- | -- | 0.153 | 21.9 | 29.55 | 406 | -- | -- |
| 43.32 | 0.308 | 10.9 | 0.12 | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
| 40 | 0.296 | 10.9 | -- | 0.246 | -- | -- | -- | 0.155 | 1.5 | -- | -- | -- | -- |
| 36.79 | 0.283 | 10.9 | -- | -- | 0.463 | -- | -- | 0.137 | -- | 29.75 | 250 | -- | -- |
| 43.71 | 0.309 | 10.9 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.95 | temperature | 30 | 270 | < th | dose independent | sin | 4 | NA |
| 3 | 30.11 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 6 | 30.21 | temperature | 30 | 270 | > th | dose independent | sin | 3 | NA |
| 8 | 30.24 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 10 | 30.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 12 | 30.38 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 15 | 30.44 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 4 |
| 49 | 30.60 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 57 | 30.67 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 8 |
| 92 | 30.77 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 23 |
| 115 | 30.86 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 23 |
| 116 | 30.87 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 117 | 30.88 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 122 | 30.91 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 175 | 30.96 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 13 |
| 205 | 31.01 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 219 | 31.08 | temperature | 30 | 270 | > th | dose dependent | sin | 5 | NA |
| 221 | 31.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 241 | 31.11 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 274 | 31.20 | temperature | 30 | 720 | > th | dose dependent | sin | 8 | NA |
| 276 | 31.21 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 287 | 31.26 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 389 | 31.28 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 445 | 31.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 475 | 31.35 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 488 | 31.36 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 492 | 31.36 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 547 | 31.41 | temperature | 30 | 30 | < th | dose independent | sin | 0 | NA |
| 622 | 31.48 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 681 | 31.57 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 7 |
| 713 | 31.60 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 8 |
| 742 | 31.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 747 | 31.64 | temperature | 15 | 90 | > th | dose dependent | sin | 0 | NA |
| 760 | 31.64 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 786 | 31.67 | temperature | 15 | 10 | > th | dose dependent | sin | 23 | NA |
| 934 | 31.77 | temperature | 25 | 10 | > th | dose dependent | sin | 20 | NA |
| 950 | 31.78 | temperature | 30 | 10 | > th | dose dependent | rect. | 9 | 10 |