BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0695900 Os07g0695900|AK071940
         (384 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0695900  Myb, DNA-binding domain containing protein          708   0.0  
Os06g0181300  ANTHER INDEHISCENCE1                                129   3e-30

>Os07g0695900 Myb, DNA-binding domain containing protein
          Length = 384

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/384 (90%), Positives = 349/384 (90%)

Query: 1   MTPADAFLILDFLAGNRLIPHSVFTTLLASLPSVSPHTXXXXXXXXXXXXXXXXXXXXES 60
           MTPADAFLILDFLAGNRLIPHSVFTTLLASLPSVSPHT                    ES
Sbjct: 1   MTPADAFLILDFLAGNRLIPHSVFTTLLASLPSVSPHTSPRLRAGLALRALDSALSISES 60

Query: 61  SEMDAPTLLRKARAVLADPDLAPFFPQHLXXXXXXXXXXXXXXXHLNRLLDVEWASLPPS 120
           SEMDAPTLLRKARAVLADPDLAPFFPQHL               HLNRLLDVEWASLPPS
Sbjct: 61  SEMDAPTLLRKARAVLADPDLAPFFPQHLAAPASADDAPAAAVAHLNRLLDVEWASLPPS 120

Query: 121 SLEIAAERIVGSQALHSWANADHAQRSKLRLLVGESTALEILDTLQRPDASTNHPGTLPQ 180
           SLEIAAERIVGSQALHSWANADHAQRSKLRLLVGESTALEILDTLQRPDASTNHPGTLPQ
Sbjct: 121 SLEIAAERIVGSQALHSWANADHAQRSKLRLLVGESTALEILDTLQRPDASTNHPGTLPQ 180

Query: 181 VDNAPETNGASHCAQQNDGAKSGLVKQNAEADRPQQDSTRHQQDSVQGASNSQLKESSVT 240
           VDNAPETNGASHCAQQNDGAKSGLVKQNAEADRPQQDSTRHQQDSVQGASNSQLKESSVT
Sbjct: 181 VDNAPETNGASHCAQQNDGAKSGLVKQNAEADRPQQDSTRHQQDSVQGASNSQLKESSVT 240

Query: 241 MESIRGTGPDITGFMEEATPRVAGQFAPDNIKNHQVTGSKRSLMERNPTASTYEWDGSDS 300
           MESIRGTGPDITGFMEEATPRVAGQFAPDNIKNHQVTGSKRSLMERNPTASTYEWDGSDS
Sbjct: 241 MESIRGTGPDITGFMEEATPRVAGQFAPDNIKNHQVTGSKRSLMERNPTASTYEWDGSDS 300

Query: 301 EGKRPAAKRRLPIFERTAKPSPTAAHKTRKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYP 360
           EGKRPAAKRRLPIFERTAKPSPTAAHKTRKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYP
Sbjct: 301 EGKRPAAKRRLPIFERTAKPSPTAAHKTRKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYP 360

Query: 361 DVFEDRSTVDLKDKFRNLERHLCA 384
           DVFEDRSTVDLKDKFRNLERHLCA
Sbjct: 361 DVFEDRSTVDLKDKFRNLERHLCA 384



>Os06g0181300 ANTHER INDEHISCENCE1
          Length = 426

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 143/285 (50%), Gaps = 36/285 (12%)

Query: 105 HLNRLLDVEWASLPPSSLEIAAERIVGSQALHSWANADHAQRSKLRLLVGESTALEILDT 164
            +  LL VEWA++  S LE+AAERIVG  A+ +W  AD   R+K RLL GE  A EI   
Sbjct: 169 RVRELLAVEWAAIGQSRLEMAAERIVGDGAIETWRAADEVTRAKYRLLAGEQRAREIEGK 228

Query: 165 LQRPDASTNHPGTLPQVD--NAPETNGASHCAQQNDGAKSGLVKQNAEADRPQQDSTRHQ 222
           L           T+PQ +  + PE +      +  D  KS     ++  + P   + +  
Sbjct: 229 LGE---------TIPQGNQISTPEVH------KVMDALKSSCANLHSVVEDPLP-AAKAA 272

Query: 223 QDSVQGASNSQLKESSVTMESIRGTGPDITGFMEEATPRVAGQFAPDNIKNHQVTGSKRS 282
            D V  A   +  + +    S + T  DI           AG  AP +  +    G+  S
Sbjct: 273 ADEVLAARMDKAVDLNAGEVSNQPTACDI-----------AGPSAPADNLDAPRKGTAAS 321

Query: 283 LMERNPTASTYEW-DGSDSEGKR-PAAKRRLPIFERTA----KPSPTAAHKTR-KKWSEK 335
           LM+ NPTA T++W D  D +G R P  + +LP   RT     +P+   A + + +KW   
Sbjct: 322 LMDWNPTARTFQWEDSPDPDGSRSPIHRPQLPSPRRTTFSPLQPADNKAKRRKARKWCAL 381

Query: 336 QEKTLLEGVEKYGKGNWKDIKMAYPDVFEDRSTVDLKDKFRNLER 380
           +E+TL +GVE+YG GNWKDI    PDVF  R  +DLKDK+RN+ R
Sbjct: 382 EEETLRKGVEQYGNGNWKDILTNNPDVFIGRKAMDLKDKWRNMMR 426



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.127    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,644,175
Number of extensions: 500105
Number of successful extensions: 1302
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1301
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 281
Effective length of database: 11,657,759
Effective search space: 3275830279
Effective search space used: 3275830279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)