BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0695900 Os07g0695900|AK071940
(384 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15720.1 | chr1:5406138-5407310 FORWARD LENGTH=391 62 6e-10
AT5G58340.1 | chr5:23582607-23584245 FORWARD LENGTH=449 56 3e-08
AT1G17460.2 | chr1:5999519-6002546 FORWARD LENGTH=625 54 1e-07
AT1G06910.1 | chr1:2121099-2122914 FORWARD LENGTH=391 52 7e-07
AT1G17520.1 | chr1:6024959-6027224 REVERSE LENGTH=297 50 2e-06
AT1G72740.1 | chr1:27380499-27382687 REVERSE LENGTH=288 50 2e-06
AT1G72650.2 | chr1:27350253-27353483 FORWARD LENGTH=631 49 5e-06
>AT1G15720.1 | chr1:5406138-5407310 FORWARD LENGTH=391
Length = 390
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 330 KKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPDVFEDRSTVDLKDKFRNL 378
K W+ ++ L EGV++YGK +WKDIK +YP VF DRS VDLKDK+RNL
Sbjct: 339 KFWTSEEVAALREGVKEYGK-SWKDIKNSYPVVFADRSEVDLKDKWRNL 386
>AT5G58340.1 | chr5:23582607-23584245 FORWARD LENGTH=449
Length = 448
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 318 AKPSPTAAHKTRKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPDVFEDRSTVDLKDKFRN 377
AKP + +K W ++ + L EGV++YGK +WKDIK P VF +R+ VDLKDK+RN
Sbjct: 389 AKPH---VRRPKKFWKPEEVEALREGVKEYGK-SWKDIKNGNPTVFAERTEVDLKDKWRN 444
Query: 378 L 378
L
Sbjct: 445 L 445
>AT1G17460.2 | chr1:5999519-6002546 FORWARD LENGTH=625
Length = 624
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 324 AAHKTRKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPDVFEDRSTVDLKDKFRNLER 380
+ K + W+ + + L+EGV KYG G W +IK + R+TVDLKDK+RNL++
Sbjct: 511 SGRKLHRAWTISEVEKLVEGVSKYGVGKWTEIKKLSFSPYTHRTTVDLKDKWRNLQK 567
>AT1G06910.1 | chr1:2121099-2122914 FORWARD LENGTH=391
Length = 390
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 282 SLMERNPTASTYEWD----------GSDSEGKRPAAKRRLPIFERTAKPSPTAAHKTRKK 331
SLME TA TYEW+ G D E + ++R+ + A + +
Sbjct: 278 SLMEPRSTAHTYEWNDSIDDSDGEMGDDIERINKSKRKRIVVSPLKRNRCSEGARRPKLP 337
Query: 332 WSEKQEKTLLEGVEKYGKGNWKDIKMAYPDVFEDRSTVDLKDKF 375
WS + +L+G EKYG NWK IK P V R+ D+KDKF
Sbjct: 338 WSTAETLAVLKGYEKYG-ANWKRIKDENP-VLVRRTNGDIKDKF 379
>AT1G17520.1 | chr1:6024959-6027224 REVERSE LENGTH=297
Length = 296
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 4/51 (7%)
Query: 331 KWSEKQEKTLLEGVEKYGKGNWKDIKMAYPDVFED---RSTVDLKDKFRNL 378
KW+ ++E+ LL GV K+G G WK+I + P++ E RS +DLKDK+RNL
Sbjct: 7 KWTAEEEEALLAGVRKHGPGKWKNI-LRDPELAEQLSSRSNIDLKDKWRNL 56
>AT1G72740.1 | chr1:27380499-27382687 REVERSE LENGTH=288
Length = 287
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 331 KWSEKQEKTLLEGVEKYGKGNWKDIKM--AYPDVFEDRSTVDLKDKFRNL 378
KW+ ++E+ LL G+ K+G G WK+I + D RS +DLKDK+RNL
Sbjct: 7 KWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNL 56
>AT1G72650.2 | chr1:27350253-27353483 FORWARD LENGTH=631
Length = 630
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 327 KTRKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPDVFEDRSTVDLKDKFRNL 378
K + W+ + L+EGV KYG G W +IK R++VDLKDK+RNL
Sbjct: 538 KHHRAWTLSEIAKLVEGVSKYGAGKWSEIKKHLFSSHSYRTSVDLKDKWRNL 589
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.127 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,756,339
Number of extensions: 299012
Number of successful extensions: 886
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 10
Length of query: 384
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 284
Effective length of database: 8,364,969
Effective search space: 2375651196
Effective search space used: 2375651196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)