Os07g0676200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ferredoxin-dependent glutamate synthase, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT).
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Os07g0676200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ferredoxin-dependent glutamate synthase, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.24 | 0.359 | 9.62 | -0.693 | 0.394 | -1.4 | -0.734 | 0.977 | -0.148 | 2.63 | 23.52 | 361 | -- | -- |
| 58.76 | 0.357 | 9.63 | -0.806 | 0.449 | -1.31 | -0.681 | -- | -0.171 | 2.84 | 23.33 | 377 | -- | -- |
| 59.17 | 0.358 | 9.6 | -0.616 | 0.467 | -1.29 | -- | 1.36 | -0.126 | 3.93 | 22.81 | 333 | -- | -- |
| 60.4 | 0.362 | 9.62 | -0.806 | 0.515 | -1.17 | -- | -- | -0.171 | 3.73 | 22.65 | 380 | -- | -- |
| 64.66 | 0.375 | 9.6 | -0.48 | -- | -1.76 | -- | 2.38 | -0.0993 | -- | 24.25 | 264 | -- | -- |
| 85.64 | 0.434 | 9.66 | -1.1 | 0.989 | -- | 0.13 | -- | -0.367 | 4.73 | -- | -- | -- | -- |
| 85.68 | 0.433 | 9.66 | -1.1 | 0.989 | -- | -- | -- | -0.367 | 4.69 | -- | -- | -- | -- |
| 67.26 | 0.382 | 9.63 | -0.815 | -- | -1.55 | -- | -- | -0.191 | -- | 24.28 | 276 | -- | -- |
| 76.93 | 0.409 | 9.6 | -- | 0.599 | -1.54 | -- | -- | 0.00399 | 2.59 | 18.57 | 576 | -- | -- |
| 137.61 | 0.548 | 9.67 | -1.06 | -- | -- | -- | -- | -0.342 | -- | -- | -- | -- | -- |
| 117.4 | 0.507 | 9.63 | -- | 0.969 | -- | -- | -- | -0.245 | 4.72 | -- | -- | -- | -- |
| 83.04 | 0.424 | 9.6 | -- | -- | -1.71 | -- | -- | -0.0322 | -- | 23.03 | 273 | -- | -- |
| 167.22 | 0.604 | 9.64 | -- | -- | -- | -- | -- | -0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 10 | 55.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 11 | 55.87 | temperature | 15 | 720 | > th | dose dependent | sin | 3 | NA |
| 63 | 56.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 78 | 57.14 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 179 | 58.05 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 15 |
| 190 | 58.13 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 222 | 58.40 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 9 |
| 234 | 58.52 | temperature | 30 | 270 | < th | dose independent | sin | 20 | NA |
| 239 | 58.55 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 306 | 58.87 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 9 |
| 309 | 58.89 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 14 |
| 316 | 58.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 317 | 58.91 | temperature | 30 | 720 | < th | dose independent | sin | 0 | NA |
| 319 | 58.92 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 18 |
| 329 | 58.96 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 15 |
| 361 | 59.04 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 437 | 59.25 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 12 |
| 465 | 59.31 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 604 | 59.75 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 628 | 59.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 632 | 59.87 | temperature | 30 | 720 | > th | dose independent | sin | 4 | NA |
| 672 | 60.02 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 8 |
| 949 | 60.62 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 966 | 60.66 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 5 |
| 986 | 60.67 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 22 |