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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0671400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.28 (0.102) R2 : 0.47
β1 : -8.64 (0.747) R2dD : 1.64 R2D : -0.874
β2 : 1.81 (0.154) R2dC : 0.161 R2C : 0.0556
β3 : 4.85 (0.415) R2dE : 0.786 R2E : -0.589
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -30.3 (3.39) R2dD*E : 1.18 R2D*E : -1.57
γ1 : 0.0392 (0.172) R2dN8 : 1.01e-05 R2N8 : -0.0717
σ : 1.2
deviance : 658.53
__
_____
C
peak time of C : 10.4
E
wheather : temperature
threshold : 26.4
memory length : 1576
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.73
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
656.88 1.2 5.29 -8.57 1.77 4.59 -0.777 -28.6 0.00495 10.5 26.35 1533 5.72 --
742.11 1.27 4.8 -3.3 1.9 3.04 -1.21 -- 0.107 12.5 -8.29 7801 5.56 --
658.53 1.2 5.28 -8.64 1.81 4.85 -- -30.3 0.0392 10.4 26.4 1576 5.73 --
742.41 1.27 4.78 -3.3 1.84 3.21 -- -- 0.114 12.7 -13.38 8075 7.59 --
839.28 1.35 5.32 -8.44 -- 4.63 -- -29.4 0.157 -- 26.7 1375 6.16 --
865.91 1.38 4.6 -1.87 1.71 -- -0.821 -- 0.887 10.8 -- -- -- --
868.7 1.38 4.6 -1.9 1.71 -- -- -- 0.884 10.7 -- -- -- --
758.67 1.28 4.92 -3.32 -- 4.16 -- -- 0.00806 -- -47.23 7967 2.09 --
923.02 1.41 4.6 -- 2.06 1.53 -- -- 0.867 11.7 12.55 2148 8.24 --
1049.38 1.51 4.64 -1.93 -- -- -- -- 0.875 -- -- -- -- --
963.76 1.45 4.55 -- 1.72 -- -- -- 1.1 10.8 -- -- -- --
949.33 1.44 4.62 -- -- 2.39 -- -- 0.96 -- -206.8 5389 4.04 --
1147.91 1.58 4.59 -- -- -- -- -- 1.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 631.95 wind 5 43200 > th dose independent rect. 13 2
2 632.36 wind 5 43200 > th dose independent rect. 12 4
5 632.87 wind 5 43200 < th dose independent rect. 12 4
10 635.00 wind 5 43200 < th dose independent rect. 11 6
18 638.83 radiation 20 43200 < th dose independent rect. 8 1
20 639.15 humidity 80 43200 < th dose independent rect. 21 1
22 640.43 wind 3 43200 > th dose dependent rect. 12 3
23 640.54 wind 5 43200 > th dose dependent rect. 14 2
24 640.69 radiation 40 43200 < th dose independent rect. 9 1
35 643.76 radiation 40 43200 > th dose independent rect. 9 2
36 643.84 radiation 20 43200 > th dose independent rect. 7 2
39 644.16 wind 3 43200 > th dose dependent rect. 11 5
61 645.23 radiation 30 43200 > th dose dependent rect. 9 1
71 646.13 humidity 80 43200 > th dose independent rect. 21 1
74 646.75 radiation 20 43200 < th dose independent rect. 18 16
79 646.78 radiation 20 43200 < th dose independent rect. 1 9
81 646.79 radiation 20 43200 < th dose independent rect. 22 12
107 647.42 radiation 40 43200 > th dose independent rect. 7 4
123 647.45 wind 1 43200 < th dose dependent rect. 24 2
289 652.13 radiation 20 43200 < th dose independent sin 9 NA
325 652.71 wind 5 43200 < th dose independent sin 20 NA
355 653.24 radiation 40 43200 > th dose independent sin 10 NA
412 653.92 humidity 60 43200 > th dose independent rect. 11 1
460 654.34 wind 5 43200 > th dose independent sin 19 NA
466 654.53 radiation 20 43200 > th dose dependent sin 10 NA
538 654.98 humidity 70 43200 < th dose dependent rect. 10 1
560 655.18 wind 9 43200 < th dose dependent rect. 11 4
611 655.74 radiation 40 43200 < th dose dependent rect. 8 1
753 656.95 wind 3 43200 > th dose dependent rect. 10 11
847 657.63 radiation 40 43200 < th dose independent rect. 9 12
848 657.63 radiation 40 43200 < th dose independent rect. 9 14
852 657.64 radiation 40 43200 < th dose independent rect. 9 21
868 657.72 humidity 80 43200 < th dose dependent rect. 21 1