BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0671400 Os07g0671400|AK067933
(296 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G27690.1 | chr5:9803796-9805036 FORWARD LENGTH=353 72 5e-13
AT1G56210.1 | chr1:21035715-21037019 FORWARD LENGTH=365 65 3e-11
AT3G06130.1 | chr3:1853048-1854673 REVERSE LENGTH=474 60 1e-09
AT5G19090.1 | chr5:6387910-6389855 FORWARD LENGTH=588 59 4e-09
AT1G23000.1 | chr1:8143614-8144865 FORWARD LENGTH=359 56 2e-08
AT3G05220.1 | chr3:1488808-1491171 FORWARD LENGTH=578 56 3e-08
AT5G37860.1 | chr5:15069578-15070555 REVERSE LENGTH=263 54 1e-07
>AT5G27690.1 | chr5:9803796-9805036 FORWARD LENGTH=353
Length = 352
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 7 EPLQYTTTVLRVSIHCEGCKKKVKKVLQNIEGVYKVTIDAAQHK 50
EPL+YTT VLRVSIHCEGCK+K+KK+L I+GVY ID Q K
Sbjct: 25 EPLRYTTWVLRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQK 68
>AT1G56210.1 | chr1:21035715-21037019 FORWARD LENGTH=365
Length = 364
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 11 YTTTVLRVSIHCEGCKKKVKKVLQNIEGVYKVTIDAAQHK 50
Y + L+VSIHCEGCK+KVKK+L +IEGV+KV ID QHK
Sbjct: 39 YKSCTLKVSIHCEGCKRKVKKILTSIEGVFKVDIDVKQHK 78
>AT3G06130.1 | chr3:1853048-1854673 REVERSE LENGTH=474
Length = 473
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 7 EPLQYTTTVLRVSIHCEGCKKKVKKVLQNIEGVYKVTIDAAQHK 50
E ++ T VL+V+IHC+GCK+KVKK+LQ IEGV+ ID+ Q K
Sbjct: 5 EFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDSEQGK 48
>AT5G19090.1 | chr5:6387910-6389855 FORWARD LENGTH=588
Length = 587
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 7 EPLQYTTTVLRVSIHCEGCKKKVKKVLQNIEGVYKVTIDA 46
E ++ T VL+V+IHC+GCK+KVKK+LQ IEGV+ IDA
Sbjct: 5 EFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDA 44
>AT1G23000.1 | chr1:8143614-8144865 FORWARD LENGTH=359
Length = 358
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 30/42 (71%)
Query: 9 LQYTTTVLRVSIHCEGCKKKVKKVLQNIEGVYKVTIDAAQHK 50
L+ T LRV+IHCEGC KKVKK+LQ IEGV V I+A K
Sbjct: 10 LKIQTFSLRVNIHCEGCNKKVKKLLQRIEGVCHVKIEAEHQK 51
>AT3G05220.1 | chr3:1488808-1491171 FORWARD LENGTH=578
Length = 577
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 9 LQYTTTVLRVSIHCEGCKKKVKKVLQNIEGVYKVTIDAAQ 48
++ T VL+V++HCEGCK KVKK LQ IEGVY V D Q
Sbjct: 7 MKLQTCVLKVNVHCEGCKHKVKKQLQKIEGVYSVKADVEQ 46
>AT5G37860.1 | chr5:15069578-15070555 REVERSE LENGTH=263
Length = 262
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 7 EPLQYTTTVLRVSIHCEGCKKKVKKVLQNIEGVYKVTIDAAQ 48
EPL+ T L+V+I+C+GCK KVKK L+ IEGVY V ID Q
Sbjct: 7 EPLK--TYFLKVNINCQGCKMKVKKTLRKIEGVYSVDIDTDQ 46
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.123 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,790,723
Number of extensions: 62095
Number of successful extensions: 456
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 7
Length of query: 296
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,419,801
Effective search space: 1667120598
Effective search space used: 1667120598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 111 (47.4 bits)