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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0668100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.44 (0.0328) R2 : 0.446
β1 : -1.44 (0.122) R2dD : 0.188 R2D : 0.126
β2 : 1.07 (0.0849) R2dC : 0.201 R2C : 0.133
β3 : 0.967 (0.0898) R2dE : 0.175 R2E : 0.0546
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.047 (0.0743) R2dN8 : 0.000777 R2N8 : 0.0105
σ : 0.602
deviance : 167.1
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_____
C
peak time of C : 7.16
E
wheather : temperature
threshold : 21.8
memory length : 521
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.29 0.608 4.43 -1.39 1.07 1.02 -0.321 0.184 0.0805 7.1 21.3 479 -- --
166.54 0.601 4.44 -1.43 1.07 0.974 -0.452 -- 0.0457 7.14 21.82 521 -- --
166.86 0.602 4.43 -1.35 1.07 0.981 -- 0.308 0.0754 7.12 21.7 508 -- --
167.1 0.602 4.44 -1.44 1.07 0.967 -- -- 0.047 7.16 21.8 521 -- --
214.88 0.683 4.46 -1.4 -- 0.983 -- 0.179 0.0501 -- 22.3 1487 -- --
209.11 0.678 4.37 -1.1 0.89 -- -0.404 -- 0.35 7.12 -- -- -- --
209.54 0.678 4.37 -1.11 0.889 -- -- -- 0.351 7.11 -- -- -- --
214.67 0.682 4.47 -1.45 -- 0.986 -- -- 0.0331 -- 22.3 1500 -- --
217.42 0.687 4.41 -- 0.991 0.708 -- -- 0.239 7.02 22 525 -- --
251.22 0.741 4.39 -1.09 -- -- -- -- 0.367 -- -- -- -- --
241.79 0.727 4.35 -- 0.877 -- -- -- 0.474 7.19 -- -- -- --
264.62 0.758 4.41 -- -- 0.649 -- -- 0.289 -- 22.36 1424 -- --
282.52 0.785 4.37 -- -- -- -- -- 0.488 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.74 temperature 20 720 > th dose dependent rect. 18 15
2 165.76 temperature 15 720 > th dose dependent rect. 21 7
3 165.86 temperature 25 720 < th dose dependent rect. 19 9
6 165.99 temperature 10 720 > th dose dependent rect. 17 16
11 166.13 temperature 25 720 < th dose dependent rect. 17 13
15 166.17 temperature 25 720 < th dose dependent sin 12 NA
20 166.33 temperature 30 720 < th dose dependent rect. 17 15
22 166.37 temperature 15 720 > th dose dependent sin 12 NA
60 167.02 temperature 25 270 < th dose dependent rect. 21 13
127 168.27 temperature 25 270 < th dose dependent sin 8 NA
208 169.49 temperature 25 720 < th dose dependent rect. 23 2
259 170.13 temperature 25 270 < th dose dependent rect. 21 21
319 170.81 temperature 25 720 < th dose dependent rect. 9 21
451 171.93 temperature 25 270 < th dose dependent no NA NA
467 172.18 temperature 25 720 < th dose dependent rect. 3 23
537 173.15 temperature 20 1440 > th dose dependent rect. 21 2
670 174.92 temperature 30 1440 < th dose dependent rect. 21 1
686 175.07 temperature 20 720 > th dose independent rect. 21 7
774 175.79 temperature 20 270 > th dose independent rect. 23 10
776 175.80 temperature 20 720 > th dose independent rect. 19 10
830 176.17 temperature 20 720 < th dose independent rect. 20 8
862 176.34 temperature 20 720 < th dose independent rect. 19 10
870 176.40 temperature 20 720 > th dose independent sin 12 NA
972 176.89 temperature 20 270 < th dose independent rect. 22 11
988 176.97 temperature 20 270 > th dose independent sin 9 NA
991 176.98 temperature 20 270 > th dose independent rect. 21 23