BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0668100 Os07g0668100|AK106702
         (256 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0668100  Conserved hypothetical protein                      291   3e-79
Os09g0442400  t-snare domain containing protein                   166   1e-41

>Os07g0668100 Conserved hypothetical protein
          Length = 256

 Score =  291 bits (745), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 152/215 (70%), Positives = 152/215 (70%)

Query: 42  QEHRRGDXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEXXXXXXXXXXEIAGESDAVVGWT 101
           QEHRRGD                           LAE          EIAGESDAVVGWT
Sbjct: 42  QEHRRGDGEAETGGHGHREGGQGRRRRHGGEDGGLAERRRRHRRRRREIAGESDAVVGWT 101

Query: 102 GKSDGRAXXXXXXXXXXXXXEQQNCRETIQKLAQFGXXXXXXXXXXXXXIRHAHDDLMKN 161
           GKSDGRA             EQQNCRETIQKLAQFG             IRHAHDDLMKN
Sbjct: 102 GKSDGRAQSSLQFSGTSSSGEQQNCRETIQKLAQFGQQQQEELLSRQEQIRHAHDDLMKN 161

Query: 162 SESILEAQEEFRAKQASIFAALDKLYVLHNAVLVESRFIKAFFFYCCITFLVYLLTSAKQ 221
           SESILEAQEEFRAKQASIFAALDKLYVLHNAVLVESRFIKAFFFYCCITFLVYLLTSAKQ
Sbjct: 162 SESILEAQEEFRAKQASIFAALDKLYVLHNAVLVESRFIKAFFFYCCITFLVYLLTSAKQ 221

Query: 222 TFAIRGHLYFGQILRTSTQTLPTFRKAETSLNFFF 256
           TFAIRGHLYFGQILRTSTQTLPTFRKAETSLNFFF
Sbjct: 222 TFAIRGHLYFGQILRTSTQTLPTFRKAETSLNFFF 256



>Os09g0442400 t-snare domain containing protein
          Length = 639

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 88/109 (80%)

Query: 124 QNCRETIQKLAQFGXXXXXXXXXXXXXIRHAHDDLMKNSESILEAQEEFRAKQASIFAAL 183
           +  RET+QKLAQFG             IR AH+ L+ NS SILEAQEEFRAKQA+IFAAL
Sbjct: 362 EESRETVQKLAQFGQRQQEELLSRQEEIRQAHEHLIHNSHSILEAQEEFRAKQANIFAAL 421

Query: 184 DKLYVLHNAVLVESRFIKAFFFYCCITFLVYLLTSAKQTFAIRGHLYFG 232
           DKLY+LHNA+L ESRFIKAFFFYCCI FL+Y+LTSAKQTF+IRGHLYFG
Sbjct: 422 DKLYILHNAILAESRFIKAFFFYCCIVFLIYMLTSAKQTFSIRGHLYFG 470



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,173,755
Number of extensions: 96288
Number of successful extensions: 263
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 2
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)