BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0668100 Os07g0668100|AK106702
         (256 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55490.1  | chr5:22478822-22481071 REVERSE LENGTH=594          107   7e-24

>AT5G55490.1 | chr5:22478822-22481071 REVERSE LENGTH=594
          Length = 593

 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 69/109 (63%)

Query: 124 QNCRETIQKLAQFGXXXXXXXXXXXXXIRHAHDDLMKNSESILEAQEEFRAKQASIFAAL 183
           Q  R T+Q+L +F              ++  HD L +NS+S+LEAQ  F AKQA++F AL
Sbjct: 353 QESRNTLQRLKEFSQEQQEDLAKRQEKLQEVHDHLFENSKSMLEAQVAFEAKQANMFVAL 412

Query: 184 DKLYVLHNAVLVESRFIKAFFFYCCITFLVYLLTSAKQTFAIRGHLYFG 232
           DKL+ LHNA+L+ESR IKAF  Y    F++Y+ TS KQT+ IR  LY G
Sbjct: 413 DKLFALHNAMLLESRVIKAFVIYFLSIFVIYMFTSTKQTYIIRPRLYIG 461



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,720,082
Number of extensions: 70214
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 160
Effective length of database: 8,474,633
Effective search space: 1355941280
Effective search space used: 1355941280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)