Os07g0644000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ATP12 ATPase family protein.
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Os07g0644000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ATP12 ATPase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.42 | 0.25 | 10.9 | -0.459 | 0.357 | 1.03 | -0.259 | -0.184 | -0.182 | 1.62 | 9.692 | 93 | -- | -- |
| 28.44 | 0.248 | 10.9 | -0.431 | 0.358 | 1.03 | -0.225 | -- | -0.175 | 1.65 | 8.191 | 92 | -- | -- |
| 28.61 | 0.249 | 10.9 | -0.412 | 0.364 | 1.05 | -- | 0.116 | -0.172 | 1.75 | 8.004 | 92 | -- | -- |
| 28.62 | 0.249 | 10.9 | -0.428 | 0.363 | 1.05 | -- | -- | -0.176 | 1.74 | 9.102 | 92 | -- | -- |
| 30.54 | 0.257 | 10.9 | -0.604 | -- | 0.773 | -- | -1.05 | -0.198 | -- | 12.97 | 786 | -- | -- |
| 38.89 | 0.292 | 10.9 | -0.228 | 0.134 | -- | -0.35 | -- | -0.0306 | 22.7 | -- | -- | -- | -- |
| 39.39 | 0.294 | 10.9 | -0.213 | 0.137 | -- | -- | -- | -0.0292 | 22.3 | -- | -- | -- | -- |
| 31.43 | 0.261 | 10.9 | -0.406 | -- | 0.76 | -- | -- | -0.145 | -- | -8.487 | 762 | -- | -- |
| 32.96 | 0.267 | 10.9 | -- | 0.3 | 0.836 | -- | -- | -0.104 | 1.45 | 12.32 | 94 | -- | -- |
| 40.53 | 0.297 | 10.9 | -0.211 | -- | -- | -- | -- | -0.0288 | -- | -- | -- | -- | -- |
| 40.59 | 0.298 | 10.9 | -- | 0.136 | -- | -- | -- | -0.00545 | 22.2 | -- | -- | -- | -- |
| 35.29 | 0.277 | 10.9 | -- | -- | 0.612 | -- | -- | -0.0805 | -- | -1.397 | 672 | -- | -- |
| 41.71 | 0.301 | 10.9 | -- | -- | -- | -- | -- | -0.00538 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 4 | 28.12 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 8 | 28.42 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 9 | 28.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 12 | 28.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 28.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 16 | 28.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 17 | 28.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 21 | 28.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 25 | 28.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 26 | 28.77 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 28 | 28.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 70 | 29.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 81 | 29.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 133 | 29.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 183 | 29.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 190 | 29.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 195 | 29.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 225 | 29.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 231 | 29.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 248 | 29.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 266 | 29.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 280 | 29.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 322 | 30.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 377 | 30.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 390 | 30.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 444 | 30.17 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 569 | 30.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 661 | 30.43 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 778 | 30.55 | temperature | 10 | 90 | > th | dose dependent | sin | 22 | NA |
| 787 | 30.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 788 | 30.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 833 | 30.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 835 | 30.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 977 | 30.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |