BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0644000 Os07g0644000|AK064653
         (321 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0644000  ATP12 ATPase family protein                         550   e-157
Os12g0606400                                                       69   4e-12

>Os07g0644000 ATP12 ATPase family protein
          Length = 321

 Score =  550 bits (1418), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/272 (97%), Positives = 266/272 (97%)

Query: 50  IYLKKPAAAAAVTTRDETSVAMPMSFMTGSVVGKRFYREATVRRADDGNGWSVMLDYRTL 109
           IYLKKPAAAAAVTTRDETSVAMPMSFMTGSVVGKRFYREATVRRADDGNGWSVMLDYRTL
Sbjct: 50  IYLKKPAAAAAVTTRDETSVAMPMSFMTGSVVGKRFYREATVRRADDGNGWSVMLDYRTL 109

Query: 110 KSPAKRPLKLQSRTLAMAIAAEWEYQEADGIRPFTMPLMKLACTALERVPLTRKKIIDNL 169
           KSPAKRPLKLQSRTLAMAIAAEWEYQEADGIRPFTMPLMKLACTALERVPLTRKKIIDNL
Sbjct: 110 KSPAKRPLKLQSRTLAMAIAAEWEYQEADGIRPFTMPLMKLACTALERVPLTRKKIIDNL 169

Query: 170 MKKFHQDLVFCRSPDDNELTVGVYQRQKEKIDPILDWVNTEFGFKPVVYTSFFGGKQDEG 229
           MKKFHQDLVFCRSPDDNELTVGVYQRQKEKIDPILDWVNTEFGFKPVVYTSFFGGKQDEG
Sbjct: 170 MKKFHQDLVFCRSPDDNELTVGVYQRQKEKIDPILDWVNTEFGFKPVVYTSFFGGKQDEG 229

Query: 230 LANAVETVLKNTTDFELASIDXXXXXXHSLVIPLAIFRGKLGIEQAIELIRLEEDHQVDR 289
           LANAVETVLKNTTDFELASID      HSLVIPLAIFRGKLGIEQAIELIRLEEDHQVDR
Sbjct: 230 LANAVETVLKNTTDFELASIDAMAAAAHSLVIPLAIFRGKLGIEQAIELIRLEEDHQVDR 289

Query: 290 WGLVEGGHDVDIADLKVQMSSAVVFLLLSWQL 321
           WGLVEGGHDVDIADLKVQMSSAVVFLLLSWQL
Sbjct: 290 WGLVEGGHDVDIADLKVQMSSAVVFLLLSWQL 321



>Os12g0606400 
          Length = 144

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 41/51 (80%), Gaps = 2/51 (3%)

Query: 48 DEIYLKKPAAAAAVTTRDETSVAMPMSFMTGSVVGKRFYREATVRRADDGN 98
          DEIY+KKP AAAA  T+DET VAM MSFMT SVVGK FYR+A VRR DD N
Sbjct: 36 DEIYVKKPVAAAA--TQDETLVAMLMSFMTRSVVGKWFYRKAPVRRTDDRN 84



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,963,656
Number of extensions: 347192
Number of successful extensions: 606
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 220
Effective length of database: 11,762,187
Effective search space: 2587681140
Effective search space used: 2587681140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)