Os07g0637500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os07g0637500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.71 | 0.303 | 3.07 | 0.132 | 0.115 | 0.191 | 0.0831 | 0.552 | -0.0673 | 9.59 | 69.68 | 4209 | -- | -- |
| 42.12 | 0.302 | 3.07 | 0.107 | 0.119 | 0.247 | 0.0675 | -- | -0.0885 | 9.64 | 70.06 | 4191 | -- | -- |
| 41.73 | 0.301 | 3.07 | 0.135 | 0.114 | 0.188 | -- | 0.555 | -0.0674 | 9.22 | 69.71 | 4237 | -- | -- |
| 42.13 | 0.302 | 3.07 | 0.102 | 0.119 | 0.24 | -- | -- | -0.0876 | 9.25 | 70.32 | 4191 | -- | -- |
| 42.42 | 0.303 | 3.07 | 0.135 | -- | 0.189 | -- | 0.609 | -0.0659 | -- | 69.02 | 4375 | -- | -- |
| 43.11 | 0.308 | 3.07 | 0.106 | 0.11 | -- | 0.0155 | -- | -0.056 | 8.87 | -- | -- | -- | -- |
| 43.11 | 0.307 | 3.07 | 0.106 | 0.11 | -- | -- | -- | -0.0561 | 8.81 | -- | -- | -- | -- |
| 42.89 | 0.305 | 3.08 | 0.101 | -- | 0.234 | -- | -- | -0.089 | -- | 70 | 4291 | -- | -- |
| 42.41 | 0.303 | 3.08 | -- | 0.12 | 0.242 | -- | -- | -0.101 | 9.23 | 71 | 4166 | -- | -- |
| 43.8 | 0.309 | 3.07 | 0.106 | -- | -- | -- | -- | -0.0552 | -- | -- | -- | -- | -- |
| 43.41 | 0.308 | 3.07 | -- | 0.111 | -- | -- | -- | -0.0679 | 8.74 | -- | -- | -- | -- |
| 43.17 | 0.306 | 3.08 | -- | -- | 0.237 | -- | -- | -0.0997 | -- | 70 | 4261 | -- | -- |
| 44.1 | 0.31 | 3.07 | -- | -- | -- | -- | -- | -0.0671 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.15 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 37.24 | radiation | 40.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 60 | 38.00 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 62 | 38.27 | temperature | 30.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 70 | 38.87 | humidity | 60.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 74 | 39.21 | radiation | 40.0 | 10 | > th | dose independent | sin | 13 | NA |
| 79 | 39.50 | radiation | 40.0 | 10 | < th | dose independent | sin | 13 | NA |
| 85 | 39.70 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 104 | 39.79 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 111 | 39.95 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 120 | 40.20 | temperature | 30.0 | 270 | > th | dose independent | rect. | 10 | 1 |
| 123 | 40.24 | temperature | 30.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 126 | 40.26 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 147 | 40.35 | wind | 3.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 164 | 40.36 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 263 | 40.57 | wind | 3.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 362 | 40.75 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 12 | 3 |
| 367 | 40.82 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 418 | 41.03 | temperature | 30.0 | 270 | > th | dose independent | rect. | 10 | 3 |
| 447 | 41.09 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 1 | 3 |
| 452 | 41.11 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 477 | 41.15 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 507 | 41.22 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 508 | 41.22 | radiation | 30.0 | 10 | > th | dose dependent | sin | 13 | NA |
| 512 | 41.23 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 517 | 41.25 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 518 | 41.25 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 4 |
| 544 | 41.27 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 545 | 41.27 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 546 | 41.27 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 566 | 41.28 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 14 | 23 |
| 602 | 41.30 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 23 |
| 603 | 41.30 | temperature | 30.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 609 | 41.32 | humidity | 50.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 620 | 41.34 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 652 | 41.37 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 659 | 41.38 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 664 | 41.39 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 4 | 9 |
| 677 | 41.42 | humidity | 90.0 | 30 | < th | dose independent | rect. | 13 | 1 |
| 678 | 41.42 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 697 | 41.43 | wind | 7.0 | 30 | < th | dose independent | rect. | 13 | 1 |
| 706 | 41.43 | wind | 1.0 | 720 | < th | dose dependent | rect. | 6 | 2 |
| 731 | 41.44 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 732 | 41.44 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 737 | 41.45 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 759 | 41.47 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 786 | 41.48 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 818 | 41.50 | temperature | 15.0 | 30 | > th | dose independent | rect. | 14 | 23 |
| 845 | 41.51 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 889 | 41.53 | temperature | 30.0 | 270 | > th | dose independent | sin | 6 | NA |
| 900 | 41.53 | wind | 7.0 | 90 | < th | dose independent | rect. | 12 | 15 |
| 907 | 41.53 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 939 | 41.54 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 941 | 41.54 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 950 | 41.54 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 13 | 1 |
| 965 | 41.54 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 968 | 41.54 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 13 | 1 |
| 984 | 41.55 | wind | 9.0 | 30 | < th | dose independent | rect. | 14 | 23 |
| 994 | 41.55 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 6 | 8 |