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Os07g0637300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pyruvate dehydrogenase kinase isoform 2 (EC 2.7.1.99).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0335) R2 : 0.937
β1 : -0.157 (0.123) R2dD : 0.00022 R2D : -0.000862
β2 : 2.24 (0.136) R2dC : 0.0926 R2C : 0.419
β3 : 4.18 (0.108) R2dE : 0.499 R2E : 0.825
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.25 (0.289) R2dD*E : 0.0168 R2D*E : 0.0187
γ1 : 0.12 (0.0715) R2dN8 : 0.000483 R2N8 : 0.000363
σ : 0.626
deviance : 180.49
__
_____
C
peak time of C : 6.3
E
wheather : precipitation
threshold : 10.47
memory length : 281
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.2
open length of G : 14.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
175.24 0.622 13.7 -0.131 2.19 4.24 -2.25 4.46 0.125 6.39 8.211 293 23 14.3
203.47 0.664 13.7 -0.198 2.83 3.46 3.28 -- 0.154 7.45 6.025 257 23 14.4
180.49 0.626 13.7 -0.157 2.24 4.18 -- 3.25 0.12 6.3 10.47 281 23.2 14.3
228.1 0.703 13.7 -0.143 2.27 4.13 -- -- 0.112 6.36 11.31 278 23.2 14.2
229.07 0.705 13.8 -0.121 -- 5.59 -- 3.1 0.22 -- 11.11 271 23 13.8
272.61 0.774 13.6 -0.221 6.84 -- 3.76 -- 0.0796 7.95 -- -- -- --
313.95 0.83 13.6 -0.121 6.85 -- -- -- 0.0742 7.9 -- -- -- --
268.64 0.763 13.8 -0.0886 -- 5.73 -- -- 0.224 -- 12.43 298 22.6 14
228.57 0.704 13.7 -- 2.23 4.15 -- -- 0.136 6.36 11.92 279 23.2 14.2
2864.87 2.5 13.8 -0.0469 -- -- -- -- 0.166 -- -- -- -- --
314.34 0.829 13.6 -- 6.85 -- -- -- 0.0877 7.91 -- -- -- --
268.65 0.763 13.8 -- -- 5.74 -- -- 0.247 -- 14.16 305 22.6 13.9
2864.93 2.5 13.8 -- -- -- -- -- 0.171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.86 precipitation 0.1 270 < th dose independent rect. 23 15
2 180.86 precipitation 0.1 270 < th dose dependent rect. 23 15
3 181.14 temperature 15.0 270 > th dose independent rect. 14 9
5 181.34 temperature 10.0 270 > th dose independent rect. 23 15
6 181.34 atmosphere 995.0 270 > th dose independent rect. 23 15
7 182.27 wind 9.0 270 < th dose independent rect. 14 9
8 182.97 wind 9.0 270 < th dose independent rect. 23 15
14 184.63 wind 1.0 270 > th dose independent rect. 14 9
19 186.56 radiation 40.0 270 < th dose independent rect. 14 9
21 187.57 precipitation 0.1 270 < th dose independent rect. 14 9
22 187.57 precipitation 0.1 270 < th dose dependent rect. 14 9
23 187.99 atmosphere 1015.0 270 < th dose independent rect. 23 15
25 188.93 wind 7.0 90 < th dose independent rect. 11 18
27 191.73 wind 7.0 270 < th dose independent rect. 4 5
29 191.92 temperature 10.0 270 > th dose independent rect. 4 5
31 191.92 humidity 50.0 270 > th dose independent rect. 4 5
32 191.92 atmosphere 995.0 270 > th dose independent rect. 4 5
33 191.92 atmosphere 1015.0 270 < th dose independent rect. 4 5
34 191.92 temperature 10.0 270 > th dose independent rect. 9 19
35 191.97 precipitation 0.1 270 < th dose independent rect. 4 5
36 191.97 precipitation 0.1 270 < th dose dependent rect. 4 5
37 192.00 wind 9.0 270 < th dose dependent rect. 4 5
44 192.59 wind 9.0 270 < th dose independent rect. 9 19
45 192.82 temperature 30.0 270 < th dose independent rect. 4 5
48 193.17 atmosphere 1015.0 270 < th dose independent rect. 14 9
49 193.24 precipitation 0.1 270 < th dose independent rect. 9 19
50 193.24 precipitation 0.1 270 < th dose dependent rect. 9 19
51 193.68 humidity 50.0 270 > th dose independent rect. 3 7
55 193.76 temperature 15.0 270 > th dose independent rect. 3 7
56 193.77 wind 9.0 270 < th dose independent rect. 3 7
58 193.78 atmosphere 995.0 270 > th dose independent rect. 3 7
59 193.78 atmosphere 1015.0 270 < th dose independent rect. 3 7
60 193.78 temperature 10.0 270 > th dose independent rect. 10 17
62 193.94 humidity 50.0 270 > th dose independent rect. 15 18
67 194.63 radiation 40.0 270 < th dose independent rect. 4 5
79 194.96 precipitation 0.1 90 < th dose independent rect. 11 18
80 194.96 precipitation 0.1 90 < th dose dependent rect. 11 18
82 195.09 radiation 20.0 10 < th dose dependent sin 9 NA
86 195.22 precipitation 0.1 270 < th dose independent rect. 3 7
87 195.22 precipitation 0.1 270 < th dose dependent rect. 3 7
89 195.38 humidity 50.0 270 > th dose independent rect. 14 9
104 197.32 temperature 30.0 90 < th dose dependent rect. 23 6
108 197.39 radiation 1.0 270 > th dose independent rect. 9 7
114 197.77 wind 9.0 270 < th dose dependent rect. 5 3
150 199.48 precipitation 0.1 270 < th dose independent rect. 5 3
151 199.48 precipitation 0.1 270 < th dose dependent rect. 5 3
152 199.52 wind 7.0 270 < th dose independent rect. 5 3
155 199.56 temperature 10.0 270 > th dose independent rect. 5 3
157 199.56 temperature 30.0 270 < th dose independent rect. 5 3
158 199.56 humidity 50.0 270 > th dose independent rect. 5 3
160 199.56 atmosphere 995.0 270 > th dose independent rect. 5 3
161 199.56 atmosphere 1015.0 270 < th dose independent rect. 5 3
162 199.56 temperature 10.0 270 > th dose independent rect. 8 21
170 199.68 radiation 40.0 90 < th dose dependent rect. 15 10
171 199.71 wind 7.0 10 < th dose independent rect. 12 17
181 199.96 temperature 30.0 270 < th dose dependent rect. 23 4
186 200.05 radiation 40.0 270 < th dose independent rect. 5 3
200 200.40 wind 9.0 270 < th dose independent rect. 8 21
201 200.43 humidity 50.0 270 > th dose independent rect. 23 15
202 200.51 humidity 50.0 270 > th dose dependent rect. 4 5
203 200.58 precipitation 0.1 270 < th dose independent rect. 9 7
205 200.58 precipitation 0.1 270 < th dose dependent rect. 9 7
208 200.63 atmosphere 995.0 270 > th dose independent rect. 9 19
212 200.95 wind 1.0 270 > th dose independent rect. 9 19
214 201.04 temperature 15.0 270 > th dose independent rect. 16 17
215 201.05 temperature 10.0 270 > th dose independent rect. 9 7
216 201.05 atmosphere 1015.0 270 < th dose independent rect. 9 7
221 201.31 precipitation 0.1 270 < th dose independent rect. 8 21
222 201.31 precipitation 0.1 270 < th dose dependent rect. 8 21
224 201.34 wind 1.0 270 > th dose independent rect. 23 15
225 201.42 wind 9.0 270 < th dose independent rect. 16 17
227 201.44 temperature 10.0 270 > th dose dependent rect. 4 5
248 202.14 radiation 40.0 270 < th dose independent rect. 16 17
250 202.19 temperature 15.0 10 > th dose independent rect. 16 9
251 202.20 wind 9.0 270 < th dose independent rect. 9 7
252 202.21 atmosphere 995.0 270 > th dose independent rect. 14 9
253 202.23 humidity 50.0 10 > th dose independent rect. 16 9
255 202.24 radiation 1.0 90 < th dose dependent sin 8 NA
260 202.38 atmosphere 995.0 90 > th dose independent rect. 11 18
263 202.46 atmosphere 1015.0 270 < th dose independent rect. 4 17
271 202.52 temperature 10.0 270 > th dose dependent rect. 5 3
275 202.65 radiation 40.0 10 < th dose dependent rect. 16 9
278 202.69 wind 1.0 270 > th dose independent rect. 10 17
288 202.75 atmosphere 995.0 270 > th dose independent rect. 9 7
290 202.83 humidity 50.0 270 > th dose dependent rect. 5 3
292 202.94 temperature 10.0 1440 > th dose independent rect. 17 9
295 202.94 radiation 30.0 1440 < th dose independent rect. 17 9
302 202.94 temperature 10.0 1440 > th dose independent rect. 2 15
308 202.99 radiation 30.0 10 < th dose independent rect. 16 9
310 202.99 temperature 10.0 10 > th dose independent rect. 1 15
312 202.99 atmosphere 1015.0 10 < th dose independent rect. 1 15
315 203.03 radiation 10.0 10 < th dose independent rect. 16 9
329 203.34 wind 1.0 270 > th dose independent rect. 22 6
331 203.36 wind 1.0 270 > th dose independent rect. 23 4
347 203.76 precipitation 0.1 10 < th dose independent rect. 16 9
349 203.76 precipitation 0.1 10 < th dose dependent rect. 16 9
354 203.87 precipitation 0.1 270 < th dose independent rect. 16 17
356 203.87 precipitation 0.1 270 < th dose dependent rect. 16 17
359 204.02 wind 9.0 270 < th dose independent rect. 21 7
360 204.02 temperature 10.0 270 > th dose independent rect. 21 7
361 204.02 temperature 30.0 270 < th dose independent rect. 21 7
362 204.02 humidity 50.0 270 > th dose independent rect. 21 7
365 204.02 atmosphere 995.0 270 > th dose independent rect. 21 7
366 204.02 radiation 1.0 270 < th dose independent rect. 21 7
371 204.02 wind 9.0 10 < th dose independent rect. 16 9
372 204.02 temperature 10.0 270 > th dose independent rect. 4 17
373 204.02 radiation 1.0 270 < th dose dependent rect. 21 7
382 204.13 wind 9.0 10 < th dose independent rect. 1 15
389 204.28 wind 9.0 270 < th dose independent rect. 4 17
415 204.70 atmosphere 995.0 270 > th dose independent rect. 16 17
421 204.86 radiation 1.0 90 < th dose independent sin 9 NA
431 205.29 atmosphere 995.0 10 > th dose independent rect. 1 15
433 205.31 precipitation 0.1 270 < th dose independent rect. 21 7
434 205.31 precipitation 0.1 270 < th dose dependent rect. 21 7
454 205.89 radiation 1.0 90 > th dose independent rect. 4 7
473 206.25 radiation 1.0 270 > th dose independent rect. 4 4
483 206.27 atmosphere 1015.0 90 < th dose dependent rect. 5 6
489 206.39 radiation 1.0 270 < th dose independent sin 11 NA
513 206.55 radiation 40.0 270 < th dose dependent rect. 5 3
522 206.71 atmosphere 1015.0 10 < th dose independent rect. 16 9
526 206.91 precipitation 0.1 270 < th dose independent rect. 4 17
527 206.91 precipitation 0.1 270 < th dose dependent rect. 4 17
537 207.19 atmosphere 1015.0 270 < th dose independent rect. 3 20
569 207.55 wind 9.0 90 < th dose dependent rect. 11 18
572 207.72 wind 1.0 270 > th dose independent rect. 9 7
580 207.81 atmosphere 995.0 10 > th dose independent rect. 16 9
599 208.32 temperature 30.0 270 < th dose independent rect. 16 17
616 208.40 atmosphere 995.0 270 > th dose dependent rect. 22 6
623 208.55 radiation 1.0 270 > th dose independent rect. 11 2
629 208.67 temperature 15.0 270 > th dose independent rect. 14 20
649 208.99 radiation 40.0 270 < th dose dependent rect. 4 5
653 209.11 temperature 15.0 270 > th dose independent rect. 13 22
669 209.36 atmosphere 995.0 270 > th dose independent rect. 10 4
681 209.49 atmosphere 995.0 270 > th dose dependent rect. 23 4
696 209.65 atmosphere 995.0 270 > th dose independent rect. 8 21
708 209.75 wind 7.0 270 < th dose independent rect. 23 4
717 209.80 humidity 90.0 270 < th dose independent rect. 11 2
731 209.83 precipitation 0.1 270 < th dose independent rect. 23 4
733 209.83 precipitation 0.1 270 < th dose dependent rect. 23 4
747 209.98 temperature 10.0 270 > th dose independent rect. 11 2
748 209.98 atmosphere 995.0 270 > th dose independent rect. 11 2
749 209.98 atmosphere 1015.0 270 < th dose independent rect. 11 2
750 209.98 precipitation 0.1 270 < th dose independent rect. 11 2
752 209.98 wind 1.0 90 > th dose independent rect. 5 6
754 209.98 precipitation 0.1 270 < th dose dependent rect. 11 2
755 209.99 radiation 40.0 270 < th dose independent rect. 10 18
756 210.00 temperature 10.0 270 > th dose independent rect. 23 4
757 210.00 temperature 30.0 270 < th dose independent rect. 23 4
758 210.00 humidity 50.0 270 > th dose independent rect. 23 4
761 210.00 atmosphere 995.0 270 > th dose independent rect. 23 4
762 210.00 radiation 1.0 270 < th dose independent rect. 23 4
768 210.00 temperature 10.0 270 > th dose independent rect. 3 20
769 210.00 radiation 1.0 270 < th dose dependent rect. 23 4
779 210.06 atmosphere 1015.0 270 < th dose dependent rect. 5 3
797 210.24 humidity 50.0 270 > th dose independent rect. 4 17
816 210.58 wind 9.0 270 < th dose independent rect. 13 22
829 210.75 wind 9.0 10 < th dose dependent rect. 12 17
830 210.77 wind 9.0 270 < th dose independent rect. 3 20
838 210.82 humidity 90.0 270 < th dose independent rect. 10 4
861 210.98 wind 9.0 270 < th dose independent rect. 11 2
866 211.11 temperature 10.0 270 > th dose dependent rect. 9 6
930 211.82 atmosphere 995.0 270 > th dose independent rect. 4 17
945 211.89 atmosphere 1015.0 90 < th dose independent rect. 11 18
969 212.08 atmosphere 1015.0 270 < th dose independent rect. 16 17
972 212.09 wind 9.0 10 < th dose independent rect. 5 7
974 212.12 wind 9.0 270 < th dose dependent rect. 9 7