BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0637300 Os07g0637300|AY026039
         (363 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06483.1  | chr3:1990727-1992581 REVERSE LENGTH=367            558   e-159

>AT3G06483.1 | chr3:1990727-1992581 REVERSE LENGTH=367
          Length = 366

 Score =  558 bits (1437), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/366 (73%), Positives = 312/366 (85%), Gaps = 9/366 (2%)

Query: 2   ASEPVARAVAEEVGRWGSMKQTGVSLRYMMEFGSRPTERNLLLSAQFLQKELPIRIARRA 61
           A E   +++ E+V +WG MKQTGVSLRYMMEFGS+PTERNLL+SAQFL KELPIR+ARRA
Sbjct: 6   ACEMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIRVARRA 65

Query: 62  LELESLPFGLSRKPAILKVRDWYLDSFRDIRYFPEVRNRNDELAFTQMIKMIKVRHNNVV 121
           +EL++LP+GLS KPA+LKVRDWYL+SFRD+R FPE+++  DE  FTQMIK +KVRHNNVV
Sbjct: 66  IELQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIKDSGDEKDFTQMIKAVKVRHNNVV 125

Query: 122 PTMALGVQQLKNEQYRTRKIPTAFDEIHEFLDRFYMSRIGIRMLIGQHVALHDPDPEPGV 181
           P MALGV QLK             DEIH+FLDRFY+SRIGIRMLIGQHV LH+P+P    
Sbjct: 126 PMMALGVNQLKKGMNSGN-----LDEIHQFLDRFYLSRIGIRMLIGQHVELHNPNPPLHT 180

Query: 182 IGLINTELSPIQVAQAASEDARSICLREYGSAPEIDIYGDPTFTFPYVSSHLHLMLFELV 241
           +G I+T++SP++VA+ ASEDARSIC REYGSAPEI+IYGDP+FTFPYV +HLHLM++ELV
Sbjct: 181 VGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDPSFTFPYVPTHLHLMMYELV 240

Query: 242 KNSLRAVQERYMNSDKDVPPVRIIVADGAEDVTIKVSDEGGGIPRSGLPRIFTYLYSTAK 301
           KNSLRAVQER+++SD+  PP+RIIVADG EDVTIKVSDEGGGI RSGLPRIFTYLYSTA+
Sbjct: 241 KNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIARSGLPRIFTYLYSTAR 300

Query: 302 NP----PDMDCPSEGVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD 357
           NP     D+      VTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD
Sbjct: 301 NPLEEDVDLGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLGD 360

Query: 358 SEEPLP 363
           S+EPLP
Sbjct: 361 SQEPLP 366



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,095,505
Number of extensions: 351436
Number of successful extensions: 692
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,364,969
Effective search space: 2199986847
Effective search space used: 2199986847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)