Os07g0634300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0634300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.48 | 0.242 | 11.6 | 1.23 | 0.711 | 1 | 0.523 | -1.41 | 0.187 | 5.83 | 31.76 | 103 | -- | -- |
| 28.73 | 0.25 | 11.6 | 1.01 | 0.671 | 1.1 | 0.113 | -- | 0.118 | 5.56 | 54.36 | 164 | -- | -- |
| 27.04 | 0.242 | 11.6 | 1.21 | 0.706 | 1.04 | -- | -1.25 | 0.168 | 5.73 | 32.44 | 109 | -- | -- |
| 28.75 | 0.25 | 11.6 | 1.01 | 0.681 | 1.08 | -- | -- | 0.107 | 5.5 | 68.41 | 162 | -- | -- |
| 44.38 | 0.31 | 11.6 | 1.34 | -- | 1.75 | -- | -1.13 | 0.262 | -- | 36.68 | 259 | -- | -- |
| 40.3 | 0.298 | 11.6 | 0.782 | 0.966 | -- | 0.176 | -- | -0.0413 | 5 | -- | -- | -- | -- |
| 40.37 | 0.298 | 11.6 | 0.781 | 0.967 | -- | -- | -- | -0.0422 | 4.97 | -- | -- | -- | -- |
| 45.22 | 0.313 | 11.6 | 1.17 | -- | 1.72 | -- | -- | 0.216 | -- | 33.42 | 268 | -- | -- |
| 52.74 | 0.338 | 11.6 | -- | 0.822 | 0.564 | -- | -- | -0.063 | 4.95 | 111.7 | 293 | -- | -- |
| 89.57 | 0.442 | 11.6 | 0.817 | -- | -- | -- | -- | -0.0174 | -- | -- | -- | -- | -- |
| 56.46 | 0.351 | 11.7 | -- | 0.981 | -- | -- | -- | -0.129 | 4.94 | -- | -- | -- | -- |
| 78.77 | 0.413 | 11.6 | -- | -- | 1.33 | -- | -- | 0.0411 | -- | 60.5 | 263 | -- | -- |
| 107.16 | 0.483 | 11.7 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.43 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 2 | 25.46 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 25.53 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 4 | 25.57 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 5 | 25.57 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 7 | 25.58 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 8 | 25.62 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 10 | 25.70 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 11 | 25.70 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 12 | 25.71 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 13 | 25.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 15 | 25.72 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 20 | 25.77 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 22 | 25.77 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 36 | 25.88 | wind | 7 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 42 | 25.92 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 48 | 25.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 57 | 25.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 59 | 26.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 68 | 26.03 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 70 | 26.04 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 76 | 26.05 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 83 | 26.06 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 86 | 26.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 89 | 26.07 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 100 | 26.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 103 | 26.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 106 | 26.11 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 111 | 26.12 | wind | 7 | 43200 | < th | dose dependent | sin | 4 | NA |
| 112 | 26.12 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 123 | 26.13 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 124 | 26.13 | wind | 1 | 43200 | > th | dose dependent | sin | 4 | NA |
| 127 | 26.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 129 | 26.14 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 134 | 26.14 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 147 | 26.15 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 156 | 26.16 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 201 | 26.20 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 227 | 26.23 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 238 | 26.24 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 248 | 26.25 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 253 | 26.25 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 256 | 26.26 | humidity | 90 | 14400 | < th | dose independent | sin | 17 | NA |
| 261 | 26.26 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 267 | 26.27 | wind | 3 | 43200 | > th | dose independent | sin | 4 | NA |
| 269 | 26.27 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 277 | 26.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 15 |
| 335 | 26.31 | wind | 3 | 43200 | > th | dose dependent | rect. | 16 | 18 |
| 336 | 26.31 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 20 |
| 343 | 26.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 345 | 26.32 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 379 | 26.34 | wind | 1 | 43200 | > th | dose dependent | rect. | 18 | 16 |
| 382 | 26.34 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 390 | 26.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 392 | 26.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 420 | 26.36 | wind | 9 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 421 | 26.36 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 497 | 26.41 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 498 | 26.41 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 537 | 26.43 | wind | 3 | 43200 | < th | dose independent | sin | 4 | NA |
| 563 | 26.44 | wind | 9 | 43200 | > th | dose dependent | sin | 13 | NA |
| 582 | 26.45 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 583 | 26.45 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 602 | 26.46 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 652 | 26.48 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 701 | 26.50 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 719 | 26.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 749 | 26.53 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 859 | 26.58 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 887 | 26.60 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 917 | 26.61 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 919 | 26.61 | wind | 3 | 43200 | > th | dose dependent | sin | 12 | NA |
| 957 | 26.63 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |