BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0634300 Os07g0634300|AK109879
         (258 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0634300  Conserved hypothetical protein                      275   3e-74
Os03g0372700  Low temperature viability protein family protein    135   3e-32

>Os07g0634300 Conserved hypothetical protein
          Length = 258

 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/258 (59%), Positives = 154/258 (59%)

Query: 1   MGRGRSRKPRNFATFRLCPRPGAADASDRVFFRVDNNPYYVPGFXXXXXXXXXXXXXXXX 60
           MGRGRSRKPRNFATFRLCPRPGAADASDRVFFRVDNNPYYVPGF                
Sbjct: 1   MGRGRSRKPRNFATFRLCPRPGAADASDRVFFRVDNNPYYVPGFADDDVLGGAAAAAVGE 60

Query: 61  XXXXXXXXXXXXXTGPLPDHVRREILELGLPDDGYDYLAHLREIRPXXXXXXXXXXXXXF 120
                        TGPLPDHVRREILELGLPDDGYDYLAHLREIRP             F
Sbjct: 61  GDDDAPSSSASGETGPLPDHVRREILELGLPDDGYDYLAHLREIRPSISSTGGGGASAAF 120

Query: 121 LPVRRHARAHFGPPVDVKAYDASRVRIGSSGKXXXXXXXXXXXXXXXRIENAIDPDVARL 180
           LPVRRHARAHFGPPVDVKAYDASRVRIGSSGK               RIENAIDPDVARL
Sbjct: 121 LPVRRHARAHFGPPVDVKAYDASRVRIGSSGKETTTATAAAVEVEVTRIENAIDPDVARL 180

Query: 181 LXXXXXXXXXXXXXXXXXXXXXXXXXFVLVANQDDDDFVLVXXXXXXXXXXXXXXXXXXX 240
           L                         FVLVANQDDDDFVLV                   
Sbjct: 181 LEESGEPALAGSESESESEDDDLEEDFVLVANQDDDDFVLVEIENQFEEEEENIAAADDS 240

Query: 241 XXXGLKNGECKVGNSASA 258
              GLKNGECKVGNSASA
Sbjct: 241 EEDGLKNGECKVGNSASA 258



>Os03g0372700 Low temperature viability protein family protein
          Length = 500

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 94/181 (51%), Gaps = 18/181 (9%)

Query: 7   RKPRNFATFRLCPRPGAADASDRVFFRVDNNPYYVPGFXXXXXXXXXXXXXXXXXXXXXX 66
           RKPRNFATFRL PR GAAD +DRVF RVD+N Y VPGF                      
Sbjct: 9   RKPRNFATFRLFPRAGAADPNDRVFVRVDSNDYTVPGFGDDDAFDSSSLSLTGDAAAGDH 68

Query: 67  XXXXXXXTGPLPDHVRREILELGLPDDGYDYLAHLREIRPXXXXXXXXXXXXXFLPVRRH 126
                  +GPLPDHVRREILELGLPDDGY+YL HLRE+RP               P    
Sbjct: 69  FSSA---SGPLPDHVRREILELGLPDDGYNYLHHLRELRPSAAAAASSFAPNQTAPPL-- 123

Query: 127 ARAHFGPPVDVKAYDASRVRIGSSG------KXXXXXXXXXXXXXXXRIENAIDPDVARL 180
                  P+DVKAYDASRVRI S        +               RIE A+DPD+ARL
Sbjct: 124 -------PLDVKAYDASRVRIASGNVEDEMDEGRTMCKVAAKTAPVRRIERAVDPDIARL 176

Query: 181 L 181
           L
Sbjct: 177 L 177



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.144    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,004,189
Number of extensions: 159549
Number of successful extensions: 281
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 3
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)