BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0634300 Os07g0634300|AK109879
         (258 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49990.1  | chr3:18532492-18534000 REVERSE LENGTH=503           87   8e-18

>AT3G49990.1 | chr3:18532492-18534000 REVERSE LENGTH=503
          Length = 502

 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 85/193 (44%), Gaps = 21/193 (10%)

Query: 1   MGRGRSRKPRNFATFRLCPR----PGAADA--SDRVFFRVDNNPYYVPGFXXXXXXXXXX 54
           MG+ +    +  ATF LCPR    P  +DA   D++F RVD NP  + GF          
Sbjct: 1   MGKKKFIDKKKAATFELCPRDTSDPRYSDAPGGDKIFLRVDQNPVNINGFIEEDEEEEGD 60

Query: 55  XX--XXXXXXXXXXXXXXXXXTGPLPDHVRREILELGLPDDGYDYLAHLREIRPXXXXXX 112
                                +  LP HVR+EILELG PDDGY+YL HLREI+       
Sbjct: 61  SSRFDDAPEEMDYGYSSFGDSSSSLPAHVRKEILELGYPDDGYNYLEHLREIK------- 113

Query: 113 XXXXXXXFLPVRRHARAHFGPPVDVKAYDASRVRIG----SSGKXXXXXXXXXXXXXXXR 168
                  F    ++  A    P DVKAYDASRV+I       G                +
Sbjct: 114 NTGGGSNFYVNPKYEVAQL--PRDVKAYDASRVKISGMVNEEGNDNKLMYSVASKTVNVK 171

Query: 169 IENAIDPDVARLL 181
           ++ AIDP+VA LL
Sbjct: 172 VQKAIDPEVAALL 184



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.144    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,581,943
Number of extensions: 88066
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)