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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0620600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0455) R2 : 0.0828
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.616 (0.099) R2dE : 0.0773 R2E : 0.0761
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.165 (0.0957) R2dN8 : 0.00672 R2N8 : 0.00553
σ : 0.854
deviance : 336.6
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 20
memory length : 8
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
321.96 0.843 3.58 -0.382 0.572 0.972 0.887 0.735 0.0974 12 19.7 10 -- --
323.17 0.837 3.58 -0.391 0.565 0.974 0.259 -- 0.0924 12.2 19.7 9 -- --
325.38 0.84 3.58 -0.348 0.572 0.972 -- 0.735 0.0974 12 19.7 10 -- --
323.45 0.838 3.58 -0.387 0.566 0.969 -- -- 0.0953 12.3 19.67 9 -- --
333.16 0.85 3.6 -0.315 -- 0.603 -- 0.313 0.0522 -- 19.78 8 -- --
357.54 0.886 3.59 -0.404 0.226 -- -0.21 -- 0.112 23.9 -- -- -- --
357.71 0.886 3.59 -0.396 0.228 -- -- -- 0.112 0.232 -- -- -- --
332.87 0.85 3.59 -0.399 -- 0.596 -- -- 0.0945 -- 19.75 7 -- --
327.4 0.843 3.57 -- 0.574 0.973 -- -- 0.139 12.4 19.68 9 -- --
360.97 0.888 3.58 -0.388 -- -- -- -- 0.116 -- -- -- -- --
361.83 0.89 3.58 -- 0.222 -- -- -- 0.156 0.136 -- -- -- --
336.6 0.854 3.57 -- -- 0.616 -- -- 0.165 -- 20 8 -- --
364.95 0.892 3.57 -- -- -- -- -- 0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.69 radiation 20 10 < th dose independent rect. 5 11
2 315.20 radiation 30 30 < th dose dependent rect. 5 11
4 315.24 radiation 20 10 < th dose independent rect. 5 14
6 315.78 radiation 10 90 < th dose dependent rect. 5 3
9 316.38 radiation 20 30 < th dose independent rect. 12 22
16 316.85 radiation 30 30 < th dose dependent rect. 5 14
18 317.26 radiation 30 30 < th dose dependent rect. 5 5
39 318.73 radiation 20 10 < th dose independent rect. 5 22
45 319.05 radiation 1 90 < th dose independent rect. 5 10
56 319.56 radiation 20 30 < th dose independent rect. 5 5
76 320.36 radiation 20 10 > th dose independent rect. 15 23
80 320.51 radiation 20 10 < th dose independent rect. 13 19
87 320.85 radiation 1 90 < th dose independent rect. 5 3
103 321.52 radiation 40 10 < th dose dependent rect. 12 22
133 322.49 humidity 50 30 > th dose dependent rect. 5 14
139 322.71 radiation 20 10 < th dose independent rect. 5 17
158 323.31 radiation 20 10 > th dose independent rect. 7 7
173 323.33 radiation 20 10 < th dose independent sin 2 NA
195 323.96 wind 5 270 < th dose independent rect. 16 11
205 324.20 radiation 30 10 < th dose dependent rect. 5 22
211 324.26 radiation 20 10 > th dose independent sin 2 NA
221 324.56 radiation 20 10 < th dose independent rect. 9 23
228 324.66 radiation 20 10 < th dose independent rect. 21 23
230 324.70 radiation 20 10 < th dose independent no NA NA
231 324.70 radiation 30 10 < th dose dependent sin 1 NA
235 324.78 wind 9 43200 > th dose independent rect. 16 16
236 324.80 humidity 80 30 > th dose independent rect. 19 10
240 324.82 wind 5 30 < th dose independent rect. 19 10
245 324.92 radiation 20 10 < th dose independent rect. 23 23
249 324.97 radiation 20 10 < th dose independent rect. 15 23
250 325.01 humidity 50 270 > th dose independent rect. 14 16
261 325.17 wind 7 43200 > th dose dependent rect. 17 3
263 325.18 radiation 20 10 > th dose independent rect. 9 23
266 325.20 radiation 20 10 > th dose independent no NA NA
267 325.20 radiation 20 10 > th dose independent rect. 7 10
391 325.34 wind 9 43200 > th dose independent rect. 17 3
392 325.34 wind 7 43200 > th dose dependent rect. 16 14
398 325.43 wind 7 43200 > th dose dependent rect. 17 1
401 325.47 wind 9 43200 < th dose independent rect. 16 14
404 325.55 wind 9 43200 < th dose independent rect. 17 3
406 325.57 wind 5 4320 > th dose dependent rect. 17 4
448 325.91 radiation 20 10 < th dose independent rect. 1 23
452 325.93 temperature 30 30 < th dose dependent rect. 5 4
462 326.03 wind 5 270 < th dose independent rect. 6 22
469 326.12 wind 7 43200 > th dose independent rect. 17 1
473 326.15 wind 7 4320 < th dose independent rect. 17 4
491 326.45 humidity 60 30 > th dose independent rect. 5 14
509 326.64 wind 7 4320 > th dose independent rect. 17 4
513 326.66 radiation 1 43200 < th dose dependent rect. 21 5
534 326.75 atmosphere 1000 270 > th dose independent rect. 5 1
535 326.75 wind 9 43200 > th dose independent rect. 16 6
543 326.84 wind 7 43200 < th dose independent rect. 17 1
547 326.87 wind 9 43200 > th dose independent rect. 16 9
584 327.11 humidity 70 10 > th dose independent rect. 13 20
600 327.19 radiation 30 10 < th dose dependent rect. 5 17
630 327.30 humidity 60 270 > th dose independent rect. 12 7
632 327.30 radiation 1 43200 < th dose dependent rect. 23 3
642 327.39 atmosphere 1000 30 > th dose independent rect. 5 3
643 327.40 wind 7 43200 > th dose dependent rect. 16 7
645 327.41 wind 9 43200 < th dose independent rect. 16 9
647 327.43 wind 1 10 > th dose dependent rect. 5 3
649 327.44 wind 9 43200 < th dose independent rect. 16 5
650 327.44 wind 7 43200 > th dose dependent rect. 16 9
655 327.47 humidity 50 30 > th dose dependent rect. 19 10
684 327.62 wind 5 4320 > th dose dependent rect. 19 1
707 327.80 radiation 20 10 < th dose independent rect. 1 15
719 327.86 wind 7 4320 > th dose independent rect. 17 2
737 328.00 wind 1 30 > th dose independent rect. 5 3
741 328.02 radiation 20 10 > th dose independent rect. 11 23
747 328.08 wind 9 43200 > th dose independent sin 12 NA
768 328.16 wind 1 270 > th dose dependent rect. 4 1
771 328.17 radiation 20 10 < th dose independent rect. 1 18
790 328.28 radiation 40 30 < th dose independent rect. 5 14
793 328.30 wind 5 720 < th dose independent rect. 17 1
800 328.32 radiation 20 4320 < th dose dependent rect. 21 8
836 328.43 temperature 30 30 < th dose dependent rect. 5 14
839 328.45 wind 9 43200 < th dose independent sin 12 NA
847 328.47 wind 7 43200 > th dose dependent sin 13 NA
852 328.49 temperature 10 30 > th dose dependent rect. 8 21
853 328.50 radiation 20 4320 < th dose dependent rect. 19 10
877 328.64 radiation 20 10 < th dose independent rect. 17 23
884 328.69 temperature 30 10 < th dose independent rect. 5 14
895 328.76 humidity 50 270 > th dose independent rect. 11 21
958 329.02 temperature 20 270 > th dose independent rect. 6 21