BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0620600 Os07g0620600|AK070250
         (414 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58120.1  | chr1:21520962-21522224 FORWARD LENGTH=421          124   8e-29

>AT1G58120.1 | chr1:21520962-21522224 FORWARD LENGTH=421
          Length = 420

 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 118/261 (45%), Gaps = 22/261 (8%)

Query: 126 VNRVLKLGG---VAAGFATSGSSTLQLPDNYKAVFAHRSEAAIAFAVEKXXXXXXXXXXX 182
           ++R LK+GG   V         + L+ P NY+ V+   SE  +                 
Sbjct: 167 IDRTLKVGGIFTVQLNLQDLPPNFLKHP-NYEIVYVKSSEYTVM-----TMRKTGETEQK 220

Query: 183 XXXXGPHRKLLALPGSK-KDDALAGLEAVLLEXXXXXXXXXXXXXXXXXXX-ELTGDSL- 239
                  RKLL +     ++ AL  LE VLLE                    +L GD+L 
Sbjct: 221 QSLVATGRKLLGITEEDAREKALRKLEDVLLEPPRAASRKSRTYFKRTRYLPDLMGDNLD 280

Query: 240 -EGYRRRTFIDVAPSRGGGAASWFKKHYPRGKRVFDMVRLDAADATEPAASSSAAGIAEW 298
            E Y RR FIDV   +G     WF ++YP   + F+M +++  +  E +  S   G+ EW
Sbjct: 281 LESYSRRVFIDVGNGKGSSGMEWFVENYPTRNQKFEMYKIETVN-DEMSLESEKMGMTEW 339

Query: 299 LEGNVREEDYXXXXXXXXXXXXILRRRAAVRRVDELFLDCXXX-------XXXXXXXXPY 351
           L+ NV+EE+Y            ++R ++ ++ VDELFL+C                   Y
Sbjct: 340 LKENVKEEEYVVMKAEAEMVEEMMRSKS-IKMVDELFLECKPKGLGLRGRKMQSKSGRAY 398

Query: 352 WECLALYGRLRDHGVAVHQWW 372
           WECLALYG+LRD GVAVHQWW
Sbjct: 399 WECLALYGKLRDEGVAVHQWW 419



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,254,987
Number of extensions: 191359
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)