BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0620600 Os07g0620600|AK070250
         (414 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0620600  Conserved hypothetical protein                      550   e-156

>Os07g0620600 Conserved hypothetical protein
          Length = 414

 Score =  550 bits (1416), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 309/414 (74%), Positives = 309/414 (74%)

Query: 1   MATMKKLAARDGRAASNGXXXXXXXXXXXXXXXXXXXXXXXXXXXPATAVGDDGELYLPV 60
           MATMKKLAARDGRAASNG                           PATAVGDDGELYLPV
Sbjct: 1   MATMKKLAARDGRAASNGRLLRLVARAALLAVVVLSLVSLRLVLSPATAVGDDGELYLPV 60

Query: 61  LLAEVSDRGYLRHGSRSVFVGDAGSWAPFLERHHVAVFRAGKLRELADESVDAVLFDGDA 120
           LLAEVSDRGYLRHGSRSVFVGDAGSWAPFLERHHVAVFRAGKLRELADESVDAVLFDGDA
Sbjct: 61  LLAEVSDRGYLRHGSRSVFVGDAGSWAPFLERHHVAVFRAGKLRELADESVDAVLFDGDA 120

Query: 121 VQLGAVNRVLKLGGVAAGFATSGSSTLQLPDNYKAVFAHRSEAAIAFAVEKXXXXXXXXX 180
           VQLGAVNRVLKLGGVAAGFATSGSSTLQLPDNYKAVFAHRSEAAIAFAVEK         
Sbjct: 121 VQLGAVNRVLKLGGVAAGFATSGSSTLQLPDNYKAVFAHRSEAAIAFAVEKTTPPTTSAA 180

Query: 181 XXXXXXGPHRKLLALPGSKKDDALAGLEAVLLEXXXXXXXXXXXXXXXXXXXELTGDSLE 240
                 GPHRKLLALPGSKKDDALAGLEAVLLE                   ELTGDSLE
Sbjct: 181 VTASPVGPHRKLLALPGSKKDDALAGLEAVLLEPPQRQHRRIIRRLRPRYLPELTGDSLE 240

Query: 241 GYRRRTFIDVAPSRGGGAASWFKKHYPRGKRVFDMVRLDAADATEPAASSSAAGIAEWLE 300
           GYRRRTFIDVAPSRGGGAASWFKKHYPRGKRVFDMVRLDAADATEPAASSSAAGIAEWLE
Sbjct: 241 GYRRRTFIDVAPSRGGGAASWFKKHYPRGKRVFDMVRLDAADATEPAASSSAAGIAEWLE 300

Query: 301 GNVREEDYXXXXXXXXXXXXILRRRAAVRRVDELFLDCXXXXXXXXXXXPYWECLALYGR 360
           GNVREEDY            ILRRRAAVRRVDELFLDC           PYWECLALYGR
Sbjct: 301 GNVREEDYVVVKAGVEAVEEILRRRAAVRRVDELFLDCDAGAGADAARRPYWECLALYGR 360

Query: 361 LRDHGVAVHQWWELMNARPXXXXXXXXXXXXXXXXXXXXXLMRGKRSLWVQNKL 414
           LRDHGVAVHQWWELMNARP                     LMRGKRSLWVQNKL
Sbjct: 361 LRDHGVAVHQWWELMNARPRRERKKRERERERERESEMMELMRGKRSLWVQNKL 414



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,806,076
Number of extensions: 368617
Number of successful extensions: 1055
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)