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Os07g0595900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.06 (0.0411) R2 : 0.466
β1 : -0.0977 (0.145) R2dD : 0.000555 R2D : -0.0179
β2 : 6.87 (0.581) R2dC : 5.3 R2C : -6.69
β3 : -7.9 (0.571) R2dE : 7.19 R2E : -5.07
β4 : 22.7 (2.87) R2dD*C : 2.81 R2D*C : -2.47
β5 : -21.7 (2.8) R2dD*E : 2.68 R2D*E : -2.86
γ1 : -0.0794 (0.0848) R2dN8 : 0.00139 R2N8 : -0.0138
σ : 0.745
deviance : 251.27
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_____
C
peak time of C : 4.94
E
wheather : humidity
threshold : 70.54
memory length : 754
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 7.95

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
251.27 0.745 6.06 -0.0977 6.87 -7.9 22.7 -21.7 -0.0794 4.94 70.54 754 19 7.95
324.51 0.845 6.31 0.0932 2.07 -0.9 2.06 -- -0.276 21.4 70.54 754 19 7.95
331.57 0.855 6.28 0.093 1.42 0.0497 -- 2.12 -0.25 19.8 75.04 1210 16.2 14.6
313.63 0.825 6.24 0.835 1.61 -1.11 -- -- 0.17 19.3 68.17 2842 17.1 15
336.81 0.855 6.27 0.293 -- -2.25 -- 2.62 -0.0691 -- 73 2106 18 15.6
353.59 0.882 6.28 0.132 1.35 -- 1.78 -- -0.257 20.5 -- -- -- --
361.9 0.891 6.28 0.0844 1.37 -- -- -- -0.252 20 -- -- -- --
306.72 0.816 6.19 -0.0877 -- -2.46 -- -- -0.13 -- 71.16 2130 17.4 16.9
286.93 0.789 6.23 -- 1.43 -1.15 -- -- 0.118 19.3 69 2858 17.9 14
464.48 1.01 6.25 0.0705 -- -- -- -- -0.27 -- -- -- -- --
362.09 0.89 6.29 -- 1.37 -- -- -- -0.262 20 -- -- -- --
306.73 0.816 6.22 -- -- -2.38 -- -- -0.169 -- 71.98 2125 17.4 16.9
464.61 1.01 6.25 -- -- -- -- -- -0.278 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 266.27 humidity 70.0 720 > th dose independent rect. 19 8
2 268.44 temperature 30.0 4320 > th dose dependent rect. 18 1
20 272.71 temperature 30.0 720 < th dose independent rect. 17 9
21 273.17 humidity 90.0 90 > th dose dependent rect. 4 1
22 273.85 temperature 30.0 720 > th dose dependent rect. 18 15
24 274.45 temperature 30.0 720 > th dose dependent rect. 18 1
40 275.47 wind 1.0 90 < th dose dependent rect. 4 1
43 275.70 wind 1.0 90 < th dose independent rect. 4 1
44 276.15 humidity 70.0 4320 < th dose dependent rect. 19 2
70 276.60 humidity 70.0 4320 < th dose independent rect. 19 12
71 276.66 humidity 70.0 4320 < th dose independent rect. 19 2
81 276.86 humidity 90.0 90 > th dose independent rect. 4 1
84 277.66 humidity 70.0 720 < th dose independent rect. 19 1
95 278.07 wind 3.0 90 < th dose dependent rect. 3 4
100 278.51 humidity 70.0 720 > th dose independent rect. 16 18
101 278.57 temperature 25.0 90 < th dose independent rect. 4 1
102 278.74 radiation 1.0 720 > th dose independent rect. 18 1
115 279.06 radiation 1.0 720 > th dose dependent rect. 18 1
126 279.11 humidity 90.0 10 > th dose independent rect. 4 2
127 279.17 humidity 70.0 720 < th dose dependent rect. 19 1
141 279.43 humidity 70.0 720 > th dose independent rect. 16 20
145 279.64 temperature 15.0 90 > th dose dependent rect. 3 4
164 279.99 radiation 20.0 1440 > th dose independent rect. 16 16
171 280.52 humidity 70.0 720 > th dose independent sin 12 NA
178 280.80 temperature 15.0 90 > th dose dependent rect. 4 1
183 281.06 wind 5.0 90 < th dose dependent rect. 4 1
188 281.31 temperature 30.0 720 < th dose independent rect. 17 16
203 281.98 temperature 30.0 4320 > th dose independent rect. 18 1
217 281.98 humidity 90.0 10 > th dose dependent rect. 4 2
219 282.15 radiation 20.0 1440 > th dose dependent rect. 16 16
222 282.45 temperature 10.0 270 > th dose dependent rect. 1 4
239 282.66 temperature 30.0 4320 < th dose independent rect. 18 2
241 282.69 atmosphere 1015.0 90 < th dose dependent rect. 4 1
245 282.78 humidity 50.0 4320 < th dose dependent rect. 16 1
247 282.85 temperature 30.0 720 > th dose independent rect. 18 1
277 283.14 wind 3.0 90 < th dose independent rect. 3 4
286 283.40 temperature 30.0 4320 < th dose independent rect. 18 4
309 283.68 temperature 25.0 270 < th dose independent rect. 1 4
311 283.71 humidity 50.0 1440 < th dose independent rect. 16 1
326 283.79 humidity 80.0 1440 > th dose independent rect. 7 1
333 283.93 wind 1.0 1440 > th dose independent rect. 4 1
336 284.01 humidity 70.0 4320 > th dose independent rect. 19 4
360 284.12 humidity 70.0 1440 > th dose independent rect. 19 2
393 284.71 temperature 15.0 10 > th dose dependent rect. 4 2
399 284.78 temperature 30.0 4320 < th dose independent rect. 18 8
401 284.81 humidity 70.0 1440 < th dose independent rect. 17 17
407 284.92 humidity 60.0 90 > th dose dependent rect. 3 4
408 284.95 radiation 40.0 14400 > th dose dependent rect. 15 1
513 285.77 radiation 1.0 90 < th dose independent rect. 4 1
517 285.86 radiation 10.0 90 < th dose dependent rect. 4 1
518 285.86 temperature 10.0 720 > th dose dependent rect. 17 6
520 285.89 precipitation 0.1 90 < th dose independent rect. 3 4
521 285.89 precipitation 0.1 90 < th dose dependent rect. 3 4
525 286.00 precipitation 0.1 90 < th dose independent rect. 4 1
526 286.00 precipitation 0.1 90 < th dose dependent rect. 4 1
528 286.03 temperature 30.0 720 < th dose independent rect. 17 2
539 286.13 temperature 10.0 90 > th dose independent rect. 4 1
542 286.13 humidity 50.0 90 > th dose independent rect. 4 1
545 286.13 atmosphere 995.0 90 > th dose independent rect. 4 1
546 286.13 atmosphere 1010.0 90 < th dose independent rect. 4 1
551 286.13 temperature 10.0 90 > th dose independent rect. 5 23
566 286.59 humidity 70.0 1440 < th dose independent rect. 17 19
567 286.63 wind 1.0 1440 < th dose independent rect. 4 1
571 286.69 humidity 50.0 1440 > th dose independent rect. 16 1
586 286.92 temperature 30.0 1440 > th dose dependent rect. 17 18
588 286.97 humidity 70.0 1440 < th dose independent sin 11 NA
605 287.41 wind 3.0 270 < th dose independent rect. 1 4
606 287.42 wind 9.0 90 < th dose independent rect. 5 23
610 287.49 temperature 15.0 720 > th dose dependent rect. 18 3
615 287.54 temperature 30.0 1440 < th dose independent sin 10 NA
617 287.56 radiation 30.0 4320 < th dose independent rect. 7 1
624 287.64 radiation 20.0 1440 < th dose independent rect. 16 16
631 287.71 precipitation 0.1 270 < th dose independent rect. 1 4
633 287.71 precipitation 0.1 270 < th dose dependent rect. 1 4
635 287.72 temperature 30.0 1440 < th dose independent rect. 18 18
660 288.07 humidity 50.0 4320 < th dose independent rect. 16 18
676 288.19 humidity 70.0 720 > th dose independent rect. 17 3
678 288.19 wind 9.0 90 < th dose independent rect. 7 20
697 288.26 atmosphere 1010.0 90 < th dose independent rect. 3 4
708 288.30 radiation 20.0 90 < th dose independent rect. 3 4
715 288.40 radiation 20.0 1440 > th dose independent rect. 6 2
734 288.44 humidity 60.0 270 > th dose dependent rect. 1 4
776 288.54 temperature 30.0 1440 > th dose independent rect. 17 18
813 288.63 temperature 30.0 1440 > th dose dependent sin 10 NA
814 288.64 temperature 15.0 90 > th dose independent rect. 7 20
818 288.65 temperature 10.0 90 > th dose independent rect. 3 4
821 288.65 humidity 50.0 90 > th dose independent rect. 3 4
823 288.65 atmosphere 995.0 90 > th dose independent rect. 3 4
830 288.72 wind 3.0 10 < th dose independent rect. 4 3
832 288.74 radiation 20.0 1440 < th dose independent rect. 16 12
893 288.95 wind 7.0 270 < th dose independent rect. 5 20
941 289.10 radiation 40.0 14400 > th dose independent rect. 15 1
973 289.11 radiation 40.0 90 < th dose dependent rect. 3 4
975 289.13 radiation 30.0 4320 < th dose independent rect. 22 10
982 289.18 humidity 50.0 4320 > th dose independent rect. 16 18
985 289.23 radiation 20.0 1440 < th dose independent rect. 16 2