BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0595900 Os07g0595900|Os07g0595900
         (349 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0595900                                                      497   e-141

>Os07g0595900 
          Length = 349

 Score =  497 bits (1279), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/349 (75%), Positives = 263/349 (75%)

Query: 1   MARXXXXXXXVVRLPPMNALEILRETVRVLRADPHAFTSVLFFXXXXXXXXXXXXXXXXX 60
           MAR       VVRLPPMNALEILRETVRVLRADPHAFTSVLFF                 
Sbjct: 1   MARGGGGGGGVVRLPPMNALEILRETVRVLRADPHAFTSVLFFLLCPASGCLLLSAAALE 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXTHFVRQLAHHLAATLVASVVSFPATFTLLLXXXXXXXX 120
                                 THFVRQLAHHLAATLVASVVSFPATFTLLL        
Sbjct: 61  GAAVLPLARRLLAAAAASGLPLTHFVRQLAHHLAATLVASVVSFPATFTLLLAARAAAAY 120

Query: 121 XXXXXXXGKPLLAGAEXXXXXXXXXXXXXXXXXXXXXXXXXCLSSFLALLVTACSTLKFM 180
                  GKPLLAGAE                         CLSSFLALLVTACSTLKFM
Sbjct: 121 AVAAVYAGKPLLAGAELSLLARRAWPRLAATYALACAAVIACLSSFLALLVTACSTLKFM 180

Query: 181 LYPPDIVVCAGLLTVLAFSVAYAHTIIVCNLGGVIAVLEDIAGVSALRRSVQLMRGQTHV 240
           LYPPDIVVCAGLLTVLAFSVAYAHTIIVCNLGGVIAVLEDIAGVSALRRSVQLMRGQTHV
Sbjct: 181 LYPPDIVVCAGLLTVLAFSVAYAHTIIVCNLGGVIAVLEDIAGVSALRRSVQLMRGQTHV 240

Query: 241 GLLIFLGSTIGLAFVEGLFEHRVKTLSYGDGSSRLWEGPLLVLMYSFVMLIDSMMSVVFY 300
           GLLIFLGSTIGLAFVEGLFEHRVKTLSYGDGSSRLWEGPLLVLMYSFVMLIDSMMSVVFY
Sbjct: 241 GLLIFLGSTIGLAFVEGLFEHRVKTLSYGDGSSRLWEGPLLVLMYSFVMLIDSMMSVVFY 300

Query: 301 FTCRSSSMEILDDEGGSIEELEMMKFGRSAFQITAIFKSPTHKKKYLQW 349
           FTCRSSSMEILDDEGGSIEELEMMKFGRSAFQITAIFKSPTHKKKYLQW
Sbjct: 301 FTCRSSSMEILDDEGGSIEELEMMKFGRSAFQITAIFKSPTHKKKYLQW 349



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,827,061
Number of extensions: 234898
Number of successful extensions: 661
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 3
Length of query: 349
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 247
Effective length of database: 11,709,973
Effective search space: 2892363331
Effective search space used: 2892363331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)