Os07g0588000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Interferon-related developmental regulator domain containing protein.
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Os07g0588000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Interferon-related developmental regulator domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.27 | 0.298 | 13.5 | -0.179 | 0.234 | -1.36 | 0.176 | 2.69 | 0.0871 | 7.88 | 21.3 | 269 | -- | -- |
| 45.24 | 0.313 | 13.6 | -0.676 | 0.256 | -1.16 | -0.087 | -- | -0.0587 | 7.98 | 21.12 | 248 | -- | -- |
| 40.27 | 0.296 | 13.5 | -0.183 | 0.238 | -1.38 | -- | 2.65 | 0.0922 | 8.18 | 21.4 | 254 | -- | -- |
| 45.21 | 0.313 | 13.6 | -0.686 | 0.281 | -1.17 | -- | -- | -0.0628 | 7.97 | 21.26 | 236 | -- | -- |
| 42.41 | 0.303 | 13.5 | -0.0864 | -- | -1.5 | -- | 2.94 | 0.127 | -- | 21.46 | 322 | -- | -- |
| 68.96 | 0.389 | 13.6 | -0.944 | 0.681 | -- | 0.173 | -- | -0.257 | 5.81 | -- | -- | -- | -- |
| 69.04 | 0.389 | 13.6 | -0.943 | 0.682 | -- | -- | -- | -0.258 | 5.81 | -- | -- | -- | -- |
| 48.13 | 0.323 | 13.6 | -0.647 | -- | -1.3 | -- | -- | -0.03 | -- | 21.04 | 326 | -- | -- |
| 56.87 | 0.351 | 13.6 | -- | 0.232 | -1.31 | -- | -- | 0.0283 | 8.89 | 21.35 | 235 | -- | -- |
| 93.15 | 0.451 | 13.6 | -0.922 | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
| 92.45 | 0.45 | 13.6 | -- | 0.667 | -- | -- | -- | -0.153 | 5.88 | -- | -- | -- | -- |
| 57.34 | 0.353 | 13.6 | -- | -- | -1.63 | -- | -- | 0.0792 | -- | 17.6 | 368 | -- | -- |
| 115.56 | 0.502 | 13.6 | -- | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.27 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 16 | 37.39 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 19 | 37.44 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 20 | 37.55 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 23 | 37.65 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 25 | 37.67 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 28 | 37.69 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 29 | 37.70 | radiation | 40 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 34 | 37.71 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 35 | 37.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 133 | 38.66 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 137 | 38.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 144 | 38.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 162 | 38.78 | temperature | 15 | 43200 | > th | dose independent | sin | 11 | NA |
| 198 | 38.91 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 199 | 38.92 | temperature | 15 | 43200 | < th | dose independent | sin | 11 | NA |
| 211 | 38.93 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 240 | 39.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 244 | 39.00 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 298 | 39.08 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 18 |
| 335 | 39.13 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 385 | 39.20 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 396 | 39.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 440 | 39.26 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 459 | 39.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 467 | 39.29 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 468 | 39.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 478 | 39.30 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 18 |
| 481 | 39.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 511 | 39.34 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 530 | 39.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 539 | 39.37 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 614 | 39.44 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 709 | 39.55 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 806 | 39.65 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 809 | 39.66 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 826 | 39.67 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 833 | 39.68 | temperature | 15 | 43200 | < th | dose dependent | sin | 10 | NA |
| 841 | 39.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 846 | 39.70 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 864 | 39.74 | humidity | 90 | 43200 | > th | dose dependent | sin | 4 | NA |
| 868 | 39.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 17 |
| 895 | 39.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 904 | 39.80 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 910 | 39.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 4 |
| 917 | 39.83 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 921 | 39.84 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 939 | 39.84 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 946 | 39.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 4 |
| 994 | 39.90 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 19 |
| 997 | 39.91 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 17 |