BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0588000 Os07g0588000|AK099482
         (438 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27760.3  | chr1:9668895-9671322 FORWARD LENGTH=442            330   1e-90

>AT1G27760.3 | chr1:9668895-9671322 FORWARD LENGTH=442
          Length = 441

 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 178/382 (46%), Positives = 248/382 (64%), Gaps = 10/382 (2%)

Query: 52  VLDKYIDALYEKRGSTREAALSQLVDAFESFILHGLVENKYATLLSLFNSSIKKGSTKEA 111
           +LD+ +DALYEKR STRE AL+ +VDAF S + +  VE K+ATLL       KKGSTKE 
Sbjct: 48  LLDQSLDALYEKRSSTREQALATIVDAFNSDLQYEFVEKKFATLLHQCLHCTKKGSTKET 107

Query: 112 CLASRAIGLLALTVGAGSSSHEIMEESHAQLSRVLQTWPDASKMISALDCLAVVTFVGAA 171
            LA+  IGLLALTVG G  + E++EES   LS+ L++  +  K+ S L+CLAV+TFVG  
Sbjct: 108 SLATHVIGLLALTVGLGDHAQEVLEESVTPLSQALKSGREILKITSILECLAVITFVGGN 167

Query: 172 DLAETELSLKAMWDVIHPKSGSNVGIIRKPRPPVLAAAISAWAFLLTTIGSWRINADSWK 231
           D  +TE S++ +W +IHPK GSNV +  KP P V++A +S+WAFLLTT+  W +    ++
Sbjct: 168 DPEQTEKSMQIIWQMIHPKLGSNV-VATKPSPAVISAVVSSWAFLLTTVDRWTLGPKIFQ 226

Query: 232 EPIAFLSTLLGAEDRAVRMAAGEALALCFELNLLDVSFGEDDDVENGGTV--GSKSKLFL 289
           E + +LSTLL  +DR+VR+AAGEALA+ +EL  L+    E     NG     G   +  +
Sbjct: 227 ETVTYLSTLLEKDDRSVRIAAGEALAVIYELGTLEKFAAEVKGSANGSVKEGGVSQEALM 286

Query: 290 DMQALKAKISSLASNLSMEAGGKGADKKNLTDQRDLFQRILDFVKYGECPEESVKISGKR 349
            M  LKAK++     LS+EAGGKG+ KK+L  QR+LF+ +++F++ G  PE S K+ G  
Sbjct: 287 HMHGLKAKVTKQVRELSVEAGGKGSAKKDLNTQRNLFKDLVEFLEDGYAPETSTKVGG-- 344

Query: 350 DVLRVSSWSELIQLNFLRRFLGRGFLKHVQENGLLQDVFDIKTDK--AETLSSTDKKIFR 407
           D L+ S+W ++IQLN+L+ FLG GF+KH+QEN  L DVF     K     LS+ +K++F+
Sbjct: 345 DYLQTSTWYQMIQLNYLKHFLGGGFIKHMQENEFLHDVFSFTPKKIGGGKLSNDEKRLFK 404

Query: 408 SGE---EKGRALKLNKDRRLAQ 426
           S      K R   L K R LA+
Sbjct: 405 SPNSALNKARTQFLAKQRMLAK 426



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,064,677
Number of extensions: 320698
Number of successful extensions: 1014
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1011
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 336
Effective length of database: 8,310,137
Effective search space: 2792206032
Effective search space used: 2792206032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)