Os07g0585600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aspartate/glutamate/uridylate kinase domain containing protein.
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Os07g0585600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aspartate/glutamate/uridylate kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.06 | 0.345 | 9.03 | 0.222 | 0.849 | 0.848 | 0.167 | 2.65 | -0.0986 | 20 | 9.911 | 94 | -- | -- |
| 58.83 | 0.357 | 9.07 | -0.087 | 0.847 | 0.835 | 0.00313 | -- | -0.154 | 20 | 18.95 | 112 | -- | -- |
| 54.14 | 0.343 | 9.03 | 0.219 | 0.847 | 0.849 | -- | 2.65 | -0.0979 | 20 | 9.767 | 98 | -- | -- |
| 58.44 | 0.356 | 9.07 | -0.151 | 0.815 | 0.764 | -- | -- | -0.197 | 19.9 | 18.8 | 157 | -- | -- |
| 79.61 | 0.416 | 9.02 | 0.111 | -- | 1.4 | -- | 2.55 | -0.188 | -- | 7.993 | 434 | -- | -- |
| 67.02 | 0.384 | 9.05 | 0.0345 | 0.97 | -- | 0.394 | -- | -0.0764 | 18.9 | -- | -- | -- | -- |
| 67.41 | 0.384 | 9.05 | 0.027 | 0.971 | -- | -- | -- | -0.0756 | 19 | -- | -- | -- | -- |
| 78.13 | 0.412 | 9.05 | -0.203 | -- | 1.16 | -- | -- | -0.211 | -- | 24.2 | 476 | -- | -- |
| 58.97 | 0.358 | 9.07 | -- | 0.817 | 0.714 | -- | -- | -0.18 | 19.9 | 19 | 165 | -- | -- |
| 116.92 | 0.505 | 9.03 | 0.00698 | -- | -- | -- | -- | -0.0936 | -- | -- | -- | -- | -- |
| 67.43 | 0.384 | 9.05 | -- | 0.97 | -- | -- | -- | -0.0786 | 19 | -- | -- | -- | -- |
| 79.18 | 0.414 | 9.05 | -- | -- | 1.13 | -- | -- | -0.184 | -- | 24.23 | 469 | -- | -- |
| 116.92 | 0.505 | 9.03 | -- | -- | -- | -- | -- | -0.0944 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 2 | 52.01 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 3 | 52.01 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 4 | 52.08 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 9 | 52.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 12 |
| 14 | 52.59 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 16 | 52.63 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 18 | 52.66 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 19 | 52.66 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 22 | 52.76 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 32 | 52.88 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 38 | 53.03 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 47 | 53.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 49 | 53.35 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 51 | 53.38 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 53 | 53.40 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 55 | 53.44 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 60 | 53.48 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 64 | 53.51 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 66 | 53.51 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 9 | 9 |
| 67 | 53.53 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 76 | 53.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 104 | 53.65 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 9 | 9 |
| 113 | 53.67 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 142 | 53.77 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 145 | 53.78 | wind | 9.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 146 | 53.78 | wind | 9.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 147 | 53.78 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 12 | 9 |
| 148 | 53.79 | wind | 9.0 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 172 | 53.84 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 175 | 53.84 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 12 |
| 180 | 53.85 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 188 | 53.86 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 197 | 53.87 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 203 | 53.88 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 213 | 53.90 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 224 | 53.93 | wind | 9.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 228 | 53.93 | wind | 9.0 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 249 | 53.96 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 282 | 54.00 | atmosphere | 1000.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 324 | 54.03 | atmosphere | 1000.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 352 | 54.04 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 379 | 54.06 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 398 | 54.07 | temperature | 15.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 399 | 54.07 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 439 | 54.09 | atmosphere | 1000.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 506 | 54.13 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 517 | 54.13 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 522 | 54.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 530 | 54.14 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 723 | 54.24 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 1 | 20 |
| 736 | 54.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 737 | 54.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 749 | 54.25 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 753 | 54.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 761 | 54.26 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 770 | 54.26 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 1 | 20 |
| 805 | 54.28 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 806 | 54.28 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 807 | 54.28 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 880 | 54.30 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 889 | 54.31 | atmosphere | 1000.0 | 14400 | > th | dose independent | no | NA | NA |
| 923 | 54.32 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 946 | 54.33 | atmosphere | 1000.0 | 14400 | < th | dose independent | no | NA | NA |
| 964 | 54.33 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 993 | 54.34 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 18 | 23 |