BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0585600 Os07g0585600|AJ441304
         (86 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22910.1  | chr2:9749988-9752737 FORWARD LENGTH=610            133   2e-32
AT4G37670.2  | chr4:17696179-17698836 REVERSE LENGTH=614          133   2e-32

>AT2G22910.1 | chr2:9749988-9752737 FORWARD LENGTH=610
          Length = 609

 Score =  133 bits (335), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/86 (69%), Positives = 77/86 (89%)

Query: 1   KIDVSRIKERLDSDSIVVVSNMGYSSSGEVLNCNTYEVATACALAIEADKLICIVDGQIF 60
           KIDV RI+ERLDS S+V++ N+G+SS+GEVLNCNTYEVATACALAI ADKLICI+DG + 
Sbjct: 232 KIDVDRIRERLDSGSVVLLRNLGHSSTGEVLNCNTYEVATACALAIGADKLICIMDGPVL 291

Query: 61  DEHGRVIPFMSLEEADMLIRKRAKQS 86
           DE+G ++ F++L+EAD L+RKRA+QS
Sbjct: 292 DENGHLVRFLTLQEADTLVRKRAQQS 317



>AT4G37670.2 | chr4:17696179-17698836 REVERSE LENGTH=614
          Length = 613

 Score =  133 bits (334), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 75/86 (87%)

Query: 1   KIDVSRIKERLDSDSIVVVSNMGYSSSGEVLNCNTYEVATACALAIEADKLICIVDGQIF 60
           KIDV RI ERLD  S+V++ N+G+SSSGEVLNCNTYEVATACALAI ADKLICI+DG I 
Sbjct: 239 KIDVDRICERLDGGSVVLLRNLGHSSSGEVLNCNTYEVATACALAIGADKLICIMDGPIL 298

Query: 61  DEHGRVIPFMSLEEADMLIRKRAKQS 86
           DE G +I F++L+EADML+RKRA+QS
Sbjct: 299 DESGHLIHFLTLQEADMLVRKRAQQS 324



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,701,896
Number of extensions: 55911
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 86
Length of database: 11,106,569
Length adjustment: 57
Effective length of query: 29
Effective length of database: 9,543,857
Effective search space: 276771853
Effective search space used: 276771853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)