Os07g0577900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Target SNARE coiled-coil region domain containing protein.
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Os07g0577900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Target SNARE coiled-coil region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.77 | 0.351 | 8.4 | 0.41 | 1.04 | 0.401 | -0.0855 | -0.545 | -0.0277 | 7.78 | 20.6 | 967 | -- | -- |
| 56.47 | 0.35 | 8.38 | 0.505 | 1.03 | 0.471 | 0.0374 | -- | -0.00726 | 7.77 | 20.5 | 1065 | -- | -- |
| 55.79 | 0.348 | 8.4 | 0.411 | 1.04 | 0.405 | -- | -0.527 | -0.0271 | 7.79 | 20.58 | 967 | -- | -- |
| 56.47 | 0.35 | 8.38 | 0.502 | 1.03 | 0.476 | -- | -- | -0.00931 | 7.79 | 20.51 | 1065 | -- | -- |
| 111.75 | 0.492 | 8.42 | 0.445 | -- | 0.416 | -- | -0.427 | -0.0122 | -- | 20.2 | 1322 | -- | -- |
| 62.37 | 0.37 | 8.36 | 0.695 | 1.01 | -- | -0.0472 | -- | 0.0993 | 7.59 | -- | -- | -- | -- |
| 62.38 | 0.37 | 8.36 | 0.694 | 1.01 | -- | -- | -- | 0.0994 | 7.6 | -- | -- | -- | -- |
| 109.26 | 0.487 | 8.42 | 0.386 | -- | 0.702 | -- | -- | -0.0274 | -- | 18.2 | 2705 | -- | -- |
| 58.28 | 0.356 | 8.42 | -- | 1.05 | 0.949 | -- | -- | -0.146 | 7.66 | 18.4 | 2398 | -- | -- |
| 117.12 | 0.506 | 8.38 | 0.708 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 75.06 | 0.405 | 8.38 | -- | 1.02 | -- | -- | -- | 0.0221 | 7.55 | -- | -- | -- | -- |
| 111.37 | 0.492 | 8.43 | -- | -- | 1.03 | -- | -- | -0.0928 | -- | 18.4 | 2768 | -- | -- |
| 130.34 | 0.533 | 8.4 | -- | -- | -- | -- | -- | 0.0361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 2 | 51.70 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 25 | 53.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 32 | 53.47 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 39 | 53.53 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 11 |
| 42 | 53.64 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 8 |
| 47 | 53.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 72 | 53.85 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 73 | 53.85 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 112 | 54.09 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 3 |
| 121 | 54.12 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 123 | 54.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 125 | 54.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 127 | 54.15 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 15 |
| 137 | 54.18 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 169 | 54.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 226 | 54.45 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 295 | 54.66 | temperature | 10 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 299 | 54.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 339 | 54.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 381 | 54.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 398 | 55.03 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 410 | 55.05 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 11 |
| 423 | 55.08 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 424 | 55.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 431 | 55.10 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 6 |
| 433 | 55.10 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 19 |
| 473 | 55.20 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 488 | 55.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 509 | 55.28 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 10 |
| 531 | 55.32 | temperature | 15 | 30 | > th | dose independent | rect. | 12 | 23 |
| 545 | 55.35 | radiation | 30 | 10 | > th | dose independent | rect. | 11 | 1 |
| 547 | 55.36 | temperature | 15 | 90 | > th | dose independent | rect. | 19 | 14 |
| 552 | 55.37 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 19 |
| 583 | 55.41 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 596 | 55.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 614 | 55.47 | temperature | 30 | 30 | < th | dose independent | rect. | 11 | 1 |
| 624 | 55.49 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 633 | 55.50 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 642 | 55.52 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 650 | 55.54 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 657 | 55.55 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 663 | 55.56 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 5 |
| 673 | 55.58 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 684 | 55.59 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 701 | 55.61 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 3 |
| 713 | 55.63 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 772 | 55.70 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 775 | 55.70 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 785 | 55.73 | temperature | 15 | 30 | > th | dose independent | rect. | 19 | 16 |
| 786 | 55.73 | wind | 1 | 10 | > th | dose independent | rect. | 12 | 23 |
| 804 | 55.76 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 812 | 55.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 823 | 55.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 2 | 16 |
| 836 | 55.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 847 | 55.82 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 879 | 55.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 889 | 55.88 | wind | 3 | 10 | > th | dose independent | rect. | 9 | 3 |
| 899 | 55.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 902 | 55.88 | radiation | 30 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 911 | 55.89 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 19 | 16 |
| 987 | 55.94 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 2 |