Os07g0572600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0572600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.73 | 0.545 | 9.1 | -0.285 | 1.29 | 1.44 | -0.836 | -0.827 | 0.0872 | 15.9 | 26.94 | 1232 | -- | -- |
| 134.85 | 0.541 | 9.07 | -0.0904 | 1.27 | 1.35 | -0.774 | -- | 0.14 | 15.9 | 27.22 | 1234 | -- | -- |
| 136.67 | 0.544 | 9.09 | -0.248 | 1.28 | 1.42 | -- | -0.648 | 0.117 | 15.9 | 27.25 | 1234 | -- | -- |
| 136.75 | 0.545 | 9.08 | -0.104 | 1.28 | 1.35 | -- | -- | 0.131 | 15.9 | 27.13 | 1240 | -- | -- |
| 179.51 | 0.624 | 9.16 | -0.333 | -- | 2.53 | -- | -0.619 | -0.266 | -- | 14.91 | 193 | -- | -- |
| 209.79 | 0.679 | 9.08 | 0.308 | 1.13 | -- | -1.22 | -- | 0.13 | 16.4 | -- | -- | -- | -- |
| 213.82 | 0.685 | 9.08 | 0.298 | 1.12 | -- | -- | -- | 0.124 | 16.4 | -- | -- | -- | -- |
| 179.82 | 0.625 | 9.15 | -0.268 | -- | 2.58 | -- | -- | -0.248 | -- | 14.8 | 190 | -- | -- |
| 137 | 0.545 | 9.07 | -- | 1.28 | 1.33 | -- | -- | 0.155 | 15.9 | 27.29 | 1233 | -- | -- |
| 280.86 | 0.783 | 9.07 | 0.254 | -- | -- | -- | -- | 0.0943 | -- | -- | -- | -- | -- |
| 216.17 | 0.688 | 9.09 | -- | 1.11 | -- | -- | -- | 0.0906 | 16.4 | -- | -- | -- | -- |
| 181.57 | 0.628 | 9.14 | -- | -- | 2.48 | -- | -- | -0.212 | -- | 15 | 187 | -- | -- |
| 282.56 | 0.785 | 9.08 | -- | -- | -- | -- | -- | 0.0661 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 2 | 137.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 4 | 137.39 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 13 | 137.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 16 | 137.94 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 19 | 138.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 24 | 138.30 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 26 | 138.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 34 | 138.66 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 41 | 138.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 59 | 139.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 60 | 139.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 63 | 139.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 70 | 139.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 74 | 139.17 | temperature | 25 | 1440 | > th | dose dependent | sin | 2 | NA |
| 76 | 139.18 | radiation | 10 | 1440 | > th | dose independent | sin | 12 | NA |
| 84 | 139.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 163 | 139.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 164 | 139.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 168 | 139.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 171 | 139.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 186 | 139.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 20 |
| 195 | 139.87 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 219 | 139.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 247 | 140.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 267 | 140.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 268 | 140.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 269 | 140.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 271 | 140.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 312 | 140.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 315 | 140.18 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 340 | 140.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 359 | 140.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 373 | 140.22 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 374 | 140.22 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 389 | 140.24 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 456 | 140.35 | temperature | 30 | 1440 | < th | dose independent | sin | 5 | NA |
| 686 | 140.71 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 713 | 140.77 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 741 | 140.82 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 839 | 140.84 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 968 | 141.24 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |