BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0572600 Os07g0572600|AK109147
(557 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0572600 Conserved hypothetical protein 995 0.0
>Os07g0572600 Conserved hypothetical protein
Length = 557
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/544 (89%), Positives = 488/544 (89%)
Query: 14 LETLVPQNHVKPPSSSFHVAGLRAAVPPSAASLGRVLWSRRYXXXXXXXXXXXXXXXXXX 73
LETLVPQNHVKPPSSSFHVAGLRAAVPPSAASLGRVLWSRRY
Sbjct: 14 LETLVPQNHVKPPSSSFHVAGLRAAVPPSAASLGRVLWSRRYLLLFVALPVLFLVLFVSL 73
Query: 74 GGASSLRXXXXXXXXXXXXXXXXXXXXXXXXXELRALYLLRSQRSGLLALFNRTAAPTNG 133
GGASSLR ELRALYLLRSQRSGLLALFNRTAAPTNG
Sbjct: 74 GGASSLRLPASIRLPSAAAPAADPAASRMRDAELRALYLLRSQRSGLLALFNRTAAPTNG 133
Query: 134 SSSGSNAVSYADLHDALLGQIKINREIQAALLSAHRTGAAGNATEDGLDLDLPADGCRRR 193
SSSGSNAVSYADLHDALLGQIKINREIQAALLSAHRTGAAGNATEDGLDLDLPADGCRRR
Sbjct: 134 SSSGSNAVSYADLHDALLGQIKINREIQAALLSAHRTGAAGNATEDGLDLDLPADGCRRR 193
Query: 194 ELPSNRRTIEWNPKKDRFLFAICVSGQMSNHLICLEKHMFFAALLGRILVVPSQKLDYQY 253
ELPSNRRTIEWNPKKDRFLFAICVSGQMSNHLICLEKHMFFAALLGRILVVPSQKLDYQY
Sbjct: 194 ELPSNRRTIEWNPKKDRFLFAICVSGQMSNHLICLEKHMFFAALLGRILVVPSQKLDYQY 253
Query: 254 DRVLDINHINDCIGRKVVITYEEFTEKRKKVSIDQFICYAASPPCFIDEDHVXXXXXXXX 313
DRVLDINHINDCIGRKVVITYEEFTEKRKKVSIDQFICYAASPPCFIDEDHV
Sbjct: 254 DRVLDINHINDCIGRKVVITYEEFTEKRKKVSIDQFICYAASPPCFIDEDHVKKLKGLGI 313
Query: 314 XXXXXQAAWPEDAKLKEPKKRFVEDIMPKFTTDAEVLAIGDMFYADVEEEWVMQPGGPLA 373
QAAWPEDAKLKEPKKRFVEDIMPKFTTDAEVLAIGDMFYADVEEEWVMQPGGPLA
Sbjct: 314 SLGKIQAAWPEDAKLKEPKKRFVEDIMPKFTTDAEVLAIGDMFYADVEEEWVMQPGGPLA 373
Query: 374 HKCNTLIQPSRLIMLTAQRFVQTFLGGNYIALHFRRHGFLKFCNVKKESCFFPIPQAAEC 433
HKCNTLIQPSRLIMLTAQRFVQTFLGGNYIALHFRRHGFLKFCNVKKESCFFPIPQAAEC
Sbjct: 374 HKCNTLIQPSRLIMLTAQRFVQTFLGGNYIALHFRRHGFLKFCNVKKESCFFPIPQAAEC 433
Query: 434 ILRIVEKANAPVIYLSTDAAESETSLLQSLVVFNDRQVPLVKRPEHHNSEKWDALLYRNH 493
ILRIVEKANAPVIYLSTDAAESETSLLQSLVVFNDRQVPLVKRPEHHNSEKWDALLYRNH
Sbjct: 434 ILRIVEKANAPVIYLSTDAAESETSLLQSLVVFNDRQVPLVKRPEHHNSEKWDALLYRNH 493
Query: 494 MGGDNQVEAMLDKTICALSNVFIGASGSTFTEDILRLRRGWGSASHCDEYLCQGELPNFI 553
MGGDNQVEAMLDKTICALSNVFIGASGSTFTEDILRLRRGWGSASHCDEYLCQGELPNFI
Sbjct: 494 MGGDNQVEAMLDKTICALSNVFIGASGSTFTEDILRLRRGWGSASHCDEYLCQGELPNFI 553
Query: 554 AELD 557
AELD
Sbjct: 554 AELD 557
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,369,246
Number of extensions: 683553
Number of successful extensions: 1403
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1402
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 451
Effective length of database: 11,501,117
Effective search space: 5187003767
Effective search space used: 5187003767
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)