Os07g0564700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0564700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.09 | 0.253 | 12.7 | -0.0868 | 0.202 | -0.608 | 0.611 | 0.866 | 0.175 | 19.8 | 35.3 | 2565 | -- | -- |
| 29.8 | 0.254 | 12.7 | 0.128 | 0.203 | -0.61 | 0.609 | -- | 0.232 | 19.6 | 46.2 | 2572 | -- | -- |
| 30.15 | 0.256 | 12.7 | -0.103 | 0.21 | -0.605 | -- | 0.853 | 0.176 | 20 | 35.14 | 2669 | -- | -- |
| 30.84 | 0.259 | 12.7 | 0.115 | 0.2 | -0.609 | -- | -- | 0.232 | 19.8 | 45.69 | 2547 | -- | -- |
| 31.88 | 0.263 | 12.7 | -0.0707 | -- | -0.682 | -- | 0.756 | 0.173 | -- | 33.4 | 2202 | -- | -- |
| 37.24 | 0.286 | 12.6 | 0.37 | 0.227 | -- | 0.55 | -- | 0.358 | 20.5 | -- | -- | -- | -- |
| 38.18 | 0.289 | 12.6 | 0.352 | 0.225 | -- | -- | -- | 0.358 | 21 | -- | -- | -- | -- |
| 32.32 | 0.265 | 12.7 | 0.1 | -- | -0.677 | -- | -- | 0.219 | -- | 32.2 | 2201 | -- | -- |
| 31.12 | 0.26 | 12.7 | -- | 0.212 | -0.653 | -- | -- | 0.214 | 19.9 | 64.34 | 2666 | -- | -- |
| 41.08 | 0.299 | 12.6 | 0.352 | -- | -- | -- | -- | 0.356 | -- | -- | -- | -- | -- |
| 41.44 | 0.301 | 12.6 | -- | 0.224 | -- | -- | -- | 0.318 | 21.1 | -- | -- | -- | -- |
| 32.56 | 0.266 | 12.7 | -- | -- | -0.719 | -- | -- | 0.192 | -- | 31.6 | 2208 | -- | -- |
| 44.34 | 0.311 | 12.6 | -- | -- | -- | -- | -- | 0.317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 2 | 28.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 5 | 28.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 28.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 20 | 28.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 22 | 28.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 27 | 28.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 30 | 28.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 33 | 28.64 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 40 | 28.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 61 | 28.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 77 | 28.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 95 | 28.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 98 | 28.79 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 100 | 28.79 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 106 | 28.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 118 | 28.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 128 | 28.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 152 | 28.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 178 | 28.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 378 | 29.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 401 | 29.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 415 | 29.12 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 418 | 29.13 | temperature | 10 | 1440 | > th | dose dependent | sin | 8 | NA |
| 502 | 29.19 | temperature | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 593 | 29.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 734 | 29.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 789 | 29.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 845 | 29.40 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 931 | 29.44 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 967 | 29.46 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |