BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0564700 Os07g0564700|AK059018
(264 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0564700 Hypothetical protein 544 e-155
Os03g0246800 Similar to Sec7p-like protein (Fragment) 70 2e-12
>Os07g0564700 Hypothetical protein
Length = 264
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MGNMMDNLLVRSLTSKSKGRTDDIVPPSPVKAPDADGADKTDDEENPMMETVRSKCITQL 60
MGNMMDNLLVRSLTSKSKGRTDDIVPPSPVKAPDADGADKTDDEENPMMETVRSKCITQL
Sbjct: 1 MGNMMDNLLVRSLTSKSKGRTDDIVPPSPVKAPDADGADKTDDEENPMMETVRSKCITQL 60
Query: 61 LLLGAIDSIQKRYWSRLKTTQQTAIMDILLSLLEFASSYNSTSNLRTRMHHIPPERPPLN 120
LLLGAIDSIQKRYWSRLKTTQQTAIMDILLSLLEFASSYNSTSNLRTRMHHIPPERPPLN
Sbjct: 61 LLLGAIDSIQKRYWSRLKTTQQTAIMDILLSLLEFASSYNSTSNLRTRMHHIPPERPPLN 120
Query: 121 LLRQELAGTAIYLEILQKSTVEHDGNDPSEDTNGHVIESDEHEKLKSLAEGKLVSFCGQI 180
LLRQELAGTAIYLEILQKSTVEHDGNDPSEDTNGHVIESDEHEKLKSLAEGKLVSFCGQI
Sbjct: 121 LLRQELAGTAIYLEILQKSTVEHDGNDPSEDTNGHVIESDEHEKLKSLAEGKLVSFCGQI 180
Query: 181 LKDASDLQPSTGEAASADIHRVLDLRAPVIVKVLNGMCIMDAQIFKKHIREFYPLITKLI 240
LKDASDLQPSTGEAASADIHRVLDLRAPVIVKVLNGMCIMDAQIFKKHIREFYPLITKLI
Sbjct: 181 LKDASDLQPSTGEAASADIHRVLDLRAPVIVKVLNGMCIMDAQIFKKHIREFYPLITKLI 240
Query: 241 CCDQMDVRGALGDLFSKQLTPLMP 264
CCDQMDVRGALGDLFSKQLTPLMP
Sbjct: 241 CCDQMDVRGALGDLFSKQLTPLMP 264
>Os03g0246800 Similar to Sec7p-like protein (Fragment)
Length = 1789
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 39/251 (15%)
Query: 33 PDADGADKTDDEENPMMETVRSKC--ITQLLLLGAIDSIQKRYWSRLKTTQQTAIMDILL 90
P DG + N +KC QLLL+ A+ I Y +RL + + + L
Sbjct: 1554 PLEDGTGEASRSRNLYFAIGDAKCRAAVQLLLIQAVMEIYNMYRARLSSQNTVILFEALH 1613
Query: 91 SLLEFASSYNSTSNLRTRMHHIPP----ERPPLNLLRQELAGTAIYLEILQKSTVEHDGN 146
++ A NS ++LR+++ + + PPL LR E + L ILQ ++ N
Sbjct: 1614 TVATHAHKINSDNDLRSKLQELGSMTQMQDPPL--LRLENESYQLCLTILQNICLDRSPN 1671
Query: 147 DPSEDTNGHVIESDEHEKLKSLAEGKLVSFCGQILK-DASDLQPSTGEAA---------- 195
+ S + H LV C ++L+ S PS A
Sbjct: 1672 ERSVEVESH-----------------LVGLCKEVLEVYLSTANPSQLSGAPQPLGHWLIP 1714
Query: 196 -SADIHRVLDLRAPVIVKVLNGMCIMDAQIFKKHIREFYPLITKLICCDQ--MDVRGALG 252
+ R L RAP++V L + + F+K++ +F+PL+ LI C+ +V+ AL
Sbjct: 1715 VGSSKRRELAARAPLVVSTLQAISGLGDSSFEKNLGQFFPLLAGLISCEHGSSEVQVALS 1774
Query: 253 DLFSKQLTPLM 263
D+FS + P++
Sbjct: 1775 DMFSTWVGPVV 1785
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,981,651
Number of extensions: 360701
Number of successful extensions: 1188
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1188
Number of HSP's successfully gapped: 2
Length of query: 264
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 165
Effective length of database: 11,866,615
Effective search space: 1957991475
Effective search space used: 1957991475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)