BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0564700 Os07g0564700|AK059018
(264 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G43300.1 | chr3:15234235-15245034 REVERSE LENGTH=1759 312 1e-85
AT3G60860.1 | chr3:22484804-22491510 FORWARD LENGTH=1794 64 9e-11
AT1G01960.1 | chr1:330830-337582 REVERSE LENGTH=1751 50 1e-06
>AT3G43300.1 | chr3:15234235-15245034 REVERSE LENGTH=1759
Length = 1758
Score = 312 bits (799), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/261 (58%), Positives = 196/261 (75%), Gaps = 13/261 (4%)
Query: 4 MMDNLLVRSLTSKSKGRTDDI-VPPSPVKAPDADGADKTDDEENPMMETVRSKCITQLLL 62
MDNL +R+LTS+ K ++ VP SP K D D + +EE+P + +R KCITQLLL
Sbjct: 1508 FMDNLFLRNLTSQPKSSVAEVTVPSSPYKHEDPTEPD-SREEESPALGAIRGKCITQLLL 1566
Query: 63 LGAIDSIQKRYWSRLKTTQQTAIMDILLSLLEFASSYNSTSNLRTRMHHIPPERPPLNLL 122
LGAI+SIQ++YWS LKT Q+ AIMDIL S +EFASSYNS SNLRTRM+HIP ERPPLNLL
Sbjct: 1567 LGAINSIQQKYWSNLKTPQKIAIMDILFSFIEFASSYNSYSNLRTRMNHIPTERPPLNLL 1626
Query: 123 RQELAGTAIYLEILQKSTVEHDGNDPSEDTNGHVIESDEHEKLKSLAEGKLVSFCGQILK 182
RQEL GT IYL++LQK+T + ++D S+ ++L+ AE KLVSFC Q+LK
Sbjct: 1627 RQELEGTTIYLDVLQKTT-----SGLADDA------SNSEDRLEGAAEEKLVSFCEQVLK 1675
Query: 183 DASDLQPSTGEAASADIHRVLDLRAPVIVKVLNGMCIMDAQIFKKHIREFYPLITKLICC 242
+ SDLQ + GE + D+HRVL+LR+PVIVKVL GMC M+ IF+KH+REFYPL+T+L+CC
Sbjct: 1676 ETSDLQSTLGETTNMDVHRVLELRSPVIVKVLEGMCFMNNTIFRKHMREFYPLLTRLVCC 1735
Query: 243 DQMDVRGALGDLFSKQLTPLM 263
+QM++RGAL +LF QL PL+
Sbjct: 1736 EQMEIRGALANLFKAQLKPLL 1756
>AT3G60860.1 | chr3:22484804-22491510 FORWARD LENGTH=1794
Length = 1793
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 49/261 (18%)
Query: 32 APDA-DGADKTDDEENPMMETVR-SKC--ITQLLLLGAIDSIQKRYWSRLKTTQQTAIMD 87
AP A DG +++ + + +KC QLLL+ A+ I Y +L ++D
Sbjct: 1549 APTATDGNEESQRTATHLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPQLSAKNTLVLVD 1608
Query: 88 ILLSLLEFASSYNSTSNLRTRMHHIPP----ERPPLNLLRQELAGTAIYLEILQKSTVEH 143
L + A NS + LR+R+ + P + PPL LR E I L LQ
Sbjct: 1609 ALHGVALHAHGINSNTILRSRLQELGPMTQMQDPPL--LRLENESYQICLTFLQN----- 1661
Query: 144 DGNDPSEDTNGHVIESDEHEKLKSLAEGK----LVSFCGQILK-------DASDLQPSTG 192
+ +D+ +K + E + LV+ C ++L A LQ +
Sbjct: 1662 -------------LVADKTKKEEEEEEEEIESLLVNICQEVLNFYIETSSSAKKLQSESS 1708
Query: 193 EAA--------SADIHRVLDLRAPVIVKVLNGMCIMDAQIFKKHIREFYPLITKLICCDQ 244
A+ + R L RAP+IV L MC +D F+K+++ +PL+ LI C+
Sbjct: 1709 RASEYRWRIPLGSGKRRELSARAPLIVATLQAMCTLDEASFEKNLKCLFPLLANLISCEH 1768
Query: 245 --MDVRGALGDLFSKQLTPLM 263
+V+ AL D+ + P++
Sbjct: 1769 GSNEVQTALADMLGLSVGPVL 1789
>AT1G01960.1 | chr1:330830-337582 REVERSE LENGTH=1751
Length = 1750
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 103/254 (40%), Gaps = 44/254 (17%)
Query: 34 DADGADKTDDEEN-----------PMMETVRSKCITQLLLLGAIDSIQKRYWSRLKTTQQ 82
D D+T+D N ++ +SK Q+ ++ A+ I Y L
Sbjct: 1512 DVSNEDETNDNSNDALRRRNRQLHAVVTDAKSKASIQIFVIQAVTDIYDMYRMSLTANHM 1571
Query: 83 TAIMDILLSLLEFASSYNSTSNLRTRMHHI-----PPERPPLNLLRQELAGTAIYLEILQ 137
+ D + + A N+ LR+++ + E P L L + +L+
Sbjct: 1572 LMLFDAMHGIGSNAHKINADLLLRSKLQELGSSLESQEAPLLRLENESFQTCMTFLD--- 1628
Query: 138 KSTVEHDGNDPSEDTNGHVIESDEHEKLKSLAEGKLVSFCGQILKDASDLQPSTGEAASA 197
N S+ G+ +E E E L+S C ++L+ ++ S +++
Sbjct: 1629 --------NLISDQPVGY----NEAE-----IESHLISLCREVLEFYINISCSKEQSSRW 1671
Query: 198 DI------HRVLDLRAPVIVKVLNGMCIMDAQIFKKHIREFYPLITKLICCDQ--MDVRG 249
+ + L RAP++V + + M +FKK++ E +PLI LI C+ +V+
Sbjct: 1672 AVPSGSGKKKELTARAPLVVAAIQTLGNMGESLFKKNLPELFPLIATLISCEHGSGEVQV 1731
Query: 250 ALGDLFSKQLTPLM 263
AL D+ + P++
Sbjct: 1732 ALSDMLQTSMGPVL 1745
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,724,109
Number of extensions: 233455
Number of successful extensions: 750
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 749
Number of HSP's successfully gapped: 3
Length of query: 264
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,447,217
Effective search space: 1410685239
Effective search space used: 1410685239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)