Os07g0546100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0546100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.44 | 0.159 | 11.5 | 1.41 | 0.322 | -0.536 | 0.176 | 1.54 | 0.338 | 8.26 | 20.08 | 1656 | -- | -- |
| 13.07 | 0.17 | 11.5 | 0.946 | 0.414 | -0.767 | 0.105 | -- | 0.222 | 10.6 | 15.95 | 8945 | -- | -- |
| 11.53 | 0.158 | 11.5 | 1.4 | 0.328 | -0.533 | -- | 1.51 | 0.335 | 8.25 | 19.84 | 1619 | -- | -- |
| 13.1 | 0.17 | 11.5 | 0.952 | 0.413 | -0.809 | -- | -- | 0.222 | 10.5 | 14.76 | 8837 | -- | -- |
| 13.26 | 0.17 | 11.5 | 1.25 | -- | -0.764 | -- | 1.25 | 0.309 | -- | 19.03 | 655 | -- | -- |
| 19.51 | 0.207 | 11.6 | 0.788 | 0.344 | -- | 0.16 | -- | 0.107 | 8.22 | -- | -- | -- | -- |
| 19.59 | 0.207 | 11.6 | 0.793 | 0.344 | -- | -- | -- | 0.107 | 8.24 | -- | -- | -- | -- |
| 14.37 | 0.177 | 11.6 | 1 | -- | -0.862 | -- | -- | 0.241 | -- | 14.79 | 640 | -- | -- |
| 34.75 | 0.276 | 11.6 | -- | 0.357 | -0.363 | -- | -- | 0.0621 | 9.19 | 5.624 | 281 | -- | -- |
| 26.11 | 0.239 | 11.6 | 0.795 | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
| 36.15 | 0.281 | 11.6 | -- | 0.348 | -- | -- | -- | 0.0187 | 8.08 | -- | -- | -- | -- |
| 37.66 | 0.286 | 11.6 | -- | -- | -0.42 | -- | -- | 0.076 | -- | 21.93 | 574 | -- | -- |
| 42.8 | 0.305 | 11.6 | -- | -- | -- | -- | -- | 0.0227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 8 | 11.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 30 | 11.32 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 39 | 11.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 19 |
| 41 | 11.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 98 | 11.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 129 | 11.51 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 134 | 11.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 141 | 11.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 151 | 11.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 169 | 11.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 186 | 11.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 239 | 11.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 266 | 11.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 501 | 11.75 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 653 | 11.82 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 780 | 11.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |