BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0546100 Os07g0546100|AK100024
(531 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0546100 Conserved hypothetical protein 805 0.0
>Os07g0546100 Conserved hypothetical protein
Length = 531
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/531 (80%), Positives = 425/531 (80%)
Query: 1 MSKKKAVTTMTLKDFHGGSIPSELPLPSAPGVSARXXXXXXXXXXXXXXXXXXXXSFLTN 60
MSKKKAVTTMTLKDFHGGSIPSELPLPSAPGVSAR SFLTN
Sbjct: 1 MSKKKAVTTMTLKDFHGGSIPSELPLPSAPGVSARPADRPVASQAAAPAAAAAVPSFLTN 60
Query: 61 PSRIGRHFDEDERTPFEXXXXXXXXXXXXXXXXXXXXXXXXRSGPGNAWGPRREXXXXXX 120
PSRIGRHFDEDERTPFE RSGPGNAWGPRRE
Sbjct: 61 PSRIGRHFDEDERTPFEAASTPRRPAPSPPSFAPSPAAGPTRSGPGNAWGPRREAAPTAA 120
Query: 121 XXXXXXXXXXXXQIWSATRIAQASAVEKVISGRWNXXXXXXXXXXXXXXXXXXETHVAPP 180
QIWSATRIAQASAVEKVISGRWN ETHVAPP
Sbjct: 121 PVSPAASGGGGGQIWSATRIAQASAVEKVISGRWNSSKPSSPPAAPVSVPVVVETHVAPP 180
Query: 181 EMERPKSVGVRELDGGIERSVAPVRPASHEGRVGEARGLEVQERPRVGDVPERPRVGDVX 240
EMERPKSVGVRELDGGIERSVAPVRPASHEGRVGEARGLEVQERPRVGDVPERPRVGDV
Sbjct: 181 EMERPKSVGVRELDGGIERSVAPVRPASHEGRVGEARGLEVQERPRVGDVPERPRVGDVL 240
Query: 241 XXXXXXXXXXXXXXIEASEPSPVYVEEKQVHQVPVVANTVQVDVIHDVHQNVVAPKAGVA 300
IEASEPSPVYVEEKQVHQVPVVANTVQVDVIHDVHQNVVAPKAGVA
Sbjct: 241 PERPKLKLLPRSKPIEASEPSPVYVEEKQVHQVPVVANTVQVDVIHDVHQNVVAPKAGVA 300
Query: 301 GADAEGRAVERPRLNLKPRSNAVGQSDESAPKERQSLFGGARPREQVLRERGIDALASDL 360
GADAEGRAVERPRLNLKPRSNAVGQSDESAPKERQSLFGGARPREQVLRERGIDALASDL
Sbjct: 301 GADAEGRAVERPRLNLKPRSNAVGQSDESAPKERQSLFGGARPREQVLRERGIDALASDL 360
Query: 361 DKTSPVGRSKSEFAKGEQKVEAMSINPSGEKAESFPAGSRGPRNADKKDYRRDTDRSDVY 420
DKTSPVGRSKSEFAKGEQKVEAMSINPSGEKAESFPAGSRGPRNADKKDYRRDTDRSDVY
Sbjct: 361 DKTSPVGRSKSEFAKGEQKVEAMSINPSGEKAESFPAGSRGPRNADKKDYRRDTDRSDVY 420
Query: 421 RPTRREDNRRVARDVEKPEQQRPEPETWRXXXXXXXXXXXAPRFGKGASALELAQAFSKS 480
RPTRREDNRRVARDVEKPEQQRPEPETWR APRFGKGASALELAQAFSKS
Sbjct: 421 RPTRREDNRRVARDVEKPEQQRPEPETWRKPVEPPKPEVVAPRFGKGASALELAQAFSKS 480
Query: 481 MSDTVPQSRLTSVPSPKVPQSPGTRDQVGFSRLTDNRALHSSPSQRKINGY 531
MSDTVPQSRLTSVPSPKVPQSPGTRDQVGFSRLTDNRALHSSPSQRKINGY
Sbjct: 481 MSDTVPQSRLTSVPSPKVPQSPGTRDQVGFSRLTDNRALHSSPSQRKINGY 531
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,372,476
Number of extensions: 655010
Number of successful extensions: 1608
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1601
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 425
Effective length of database: 11,501,117
Effective search space: 4887974725
Effective search space used: 4887974725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)