BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0546100 Os07g0546100|AK100024
         (531 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11480.1  | chr1:3864368-3866750 REVERSE LENGTH=579             92   1e-18

>AT1G11480.1 | chr1:3864368-3866750 REVERSE LENGTH=579
          Length = 578

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/249 (34%), Positives = 126/249 (50%), Gaps = 38/249 (15%)

Query: 296 KAGVAGADAEGRAVERPRLNLKPRSNAVGQSDESAPKERQSLFGGARPREQVLRERGIDA 355
           K+G++  +   +  ERP+LNLKP +  + Q +    K+R ++FGGARPRE VL+ERGID 
Sbjct: 355 KSGLSTDEIPNQPAERPKLNLKPVAQLLEQPEVKTEKDRSAVFGGARPRELVLKERGID- 413

Query: 356 LASDLDKTSPVGRSKSEFAKGEQKVEAMSINP-------SGEKAESFPAGSRGPRNADKK 408
                         + E  K +Q  + M + P       + ++  S P   R  R  D+K
Sbjct: 414 --------------EPEHHKLDQPTDRMVLKPIERVPEHASQRPVSSPRDMRT-RKFDQK 458

Query: 409 DYRRDTD--RSDVYRPTRREDNRRVARDVEKPEQQ--RPEPETWRXXXXXXXXXXXAP-- 462
           D R  +D  RS+  R   RE+  + AR  ++ +++   P PETWR               
Sbjct: 459 DGRNVSDIARSETQRRNWRENENKSARQQQQTQEKTRHPSPETWRKPVPQKLDSPNGTGI 518

Query: 463 RFGKGASALELAQAFSKSMSDTVPQSRLTSVPSPKVPQSPGTRDQVGFSRLTDNRALHSS 522
           R GK ASALELAQA+S   SD  P+S + S  S    ++  T+ Q  FSRL     + S+
Sbjct: 519 RHGKAASALELAQAYS-PFSD--PKSGIGSSNSFNKSRNNQTQQQ-PFSRL-----VGST 569

Query: 523 PSQRKINGY 531
            + R+INGY
Sbjct: 570 TTGRQINGY 578




 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 45/96 (46%), Gaps = 20/96 (20%)

Query: 1  MSKKKAVTTMTLKDFHGGSIPSELPLPSAPGVS-------------------ARXXXXXX 41
          MSKKK+   MTLKDFHGGSIPS+LPLPSAPGV+                    R      
Sbjct: 1  MSKKKSAA-MTLKDFHGGSIPSDLPLPSAPGVTPKVIPDRPVFDRAPWGNSIGRPDQRAR 59

Query: 42 XXXXXXXXXXXXXXSFLTNPSRIGRHFDEDERTPFE 77
                         FL +   IGR+F EDER P +
Sbjct: 60 PSSSHAIRNLDDKSLFLPHNVNIGRNFSEDERKPLD 95



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,622,344
Number of extensions: 353581
Number of successful extensions: 768
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 2
Length of query: 531
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 428
Effective length of database: 8,282,721
Effective search space: 3545004588
Effective search space used: 3545004588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)