Os07g0490600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Type II membrane protein.
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Os07g0490600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Type II membrane protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.68 | 0.208 | 11.6 | -0.16 | 0.47 | 0.249 | 0.0966 | 0.844 | 0.164 | 4.37 | 0.2105 | 5361 | -- | -- |
| 19.67 | 0.207 | 11.6 | -0.18 | 0.463 | 0.438 | 0.0716 | -- | 0.147 | 4.24 | 0.4403 | 3007 | -- | -- |
| 19.64 | 0.206 | 11.6 | -0.123 | 0.479 | 0.0967 | -- | 1.27 | 0.148 | 4.33 | 0.2958 | 6605 | -- | -- |
| 18.95 | 0.203 | 11.6 | -0.225 | 0.48 | 0.433 | -- | -- | 0.167 | 4.4 | 0.9174 | 15362 | -- | -- |
| 31.38 | 0.261 | 11.6 | -0.0959 | -- | 0.02 | -- | 1.64 | 0.154 | -- | 0.3893 | 6150 | -- | -- |
| 23.34 | 0.226 | 11.6 | -0.0443 | 0.477 | -- | 0.184 | -- | 0.131 | 4.31 | -- | -- | -- | -- |
| 23.42 | 0.227 | 11.6 | -0.0459 | 0.479 | -- | -- | -- | 0.13 | 4.39 | -- | -- | -- | -- |
| 31.28 | 0.26 | 11.6 | -0.204 | -- | 0.414 | -- | -- | 0.178 | -- | 0.9654 | 15321 | -- | -- |
| 20.03 | 0.208 | 11.6 | -- | 0.474 | 0.337 | -- | -- | 0.182 | 4.42 | 0.9751 | 15278 | -- | -- |
| 35.74 | 0.279 | 11.6 | -0.027 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 23.48 | 0.227 | 11.6 | -- | 0.478 | -- | -- | -- | 0.135 | 4.39 | -- | -- | -- | -- |
| 32.19 | 0.264 | 11.6 | -- | -- | 0.339 | -- | -- | 0.19 | -- | 0.9542 | 15278 | -- | -- |
| 35.76 | 0.279 | 11.6 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.27 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 2 | 18.29 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 3 | 18.31 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 18 | 18.39 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 20 | 18.41 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 36 | 18.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 37 | 18.44 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 38 | 18.44 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 39 | 18.46 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 40 | 18.46 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 43 | 18.46 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 52 | 18.48 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 70 | 18.53 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 74 | 18.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 81 | 18.56 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 84 | 18.57 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 89 | 18.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 9 |
| 91 | 18.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 93 | 18.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 9 |
| 94 | 18.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 96 | 18.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 105 | 18.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 108 | 18.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 117 | 18.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 128 | 18.70 | humidity | 60.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 132 | 18.71 | humidity | 60.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 163 | 18.76 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 167 | 18.77 | wind | 9.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 173 | 18.79 | wind | 9.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 175 | 18.79 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 202 | 18.81 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 204 | 18.81 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 220 | 18.84 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 294 | 18.86 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 21 | NA |
| 295 | 18.86 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 296 | 18.86 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 319 | 18.88 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 326 | 18.89 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 337 | 18.89 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 360 | 18.91 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 371 | 18.92 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 380 | 18.93 | radiation | 40.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 399 | 18.94 | radiation | 40.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 401 | 18.94 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 573 | 18.99 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 616 | 19.00 | radiation | 40.0 | 43200 | > th | dose independent | no | NA | NA |
| 619 | 19.00 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 811 | 19.03 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 5 |