BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0490600 Os07g0490600|AK101803
(277 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67325.2 | chr1:25209825-25212412 REVERSE LENGTH=289 125 3e-29
AT1G55040.1 | chr1:20534895-20538901 FORWARD LENGTH=850 55 3e-08
AT2G17975.1 | chr2:7822238-7823970 REVERSE LENGTH=269 51 5e-07
>AT1G67325.2 | chr1:25209825-25212412 REVERSE LENGTH=289
Length = 288
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 119/288 (41%), Gaps = 38/288 (13%)
Query: 4 AKVENRXXXXXXSKRSRNDVSVREGDWTCPQCGNVNFSFRNVCNRGACGXXXXXXXXXXX 63
++V+NR +KR+R D RE DW CP CGNVNFSFR CN C
Sbjct: 2 SQVDNRNSSA--AKRARTDGGRREDDWICPSCGNVNFSFRTTCNMRNCTQPRPADHNGKS 59
Query: 64 XXXXXXXGYDRPHLGYDRPHLFYGSAGTPPPIPLGSGSYGAPY-----------PHLG-- 110
G+ P + GS G PPP+ +G YG+P P G
Sbjct: 60 APKPMQH-----QQGFSSPGAYLGSGG-PPPVYMGGSPYGSPLFNGSSMPPYDVPFSGGS 113
Query: 111 ---LRYGYGPPVGPPASYGLFXXXXXXXXXXXXXXXXXXXXXXELGRYGYGFRGSPMPVS 167
Y P G + RYG G
Sbjct: 114 PYHFNYNSRMPAGAHYRPLHMSGPPPYHGGSMMGSGGMYGMPPPIDRYGLGM------AM 167
Query: 168 SPWSGGALVEN---NDSSASRKRRGGPDGMAENDWICPKCENVNFSFRNSCNMKKCGAPR 224
P S A++ S+KR D +NDW CP C NVNFSFR CNM+KC P+
Sbjct: 168 GPGSAAAMMPRPRFYPDEKSQKR----DSTRDNDWTCPNCGNVNFSFRTVCNMRKCNTPK 223
Query: 225 PSPGSNATPCRKDK-DAPEGSWTCPECNNLNYPFRTACNRKGCGSSRP 271
P + + K +APEGSW C C N+NYPFR+ CNR+ CG+ +P
Sbjct: 224 PGSQQGGSSDKISKQNAPEGSWKCDNCGNINYPFRSKCNRQNCGADKP 271
>AT1G55040.1 | chr1:20534895-20538901 FORWARD LENGTH=850
Length = 849
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 186 KRRGGPDG--MAENDWICPKCENVNFSFRNSCNMKKCGAPRPSPGSNATPCRKDKDAPEG 243
KRR G D M + DW+CPKC+ +NF+ C +C A RP + G
Sbjct: 360 KRRVGRDDVEMKKGDWLCPKCDFMNFAKNTIC--LQCDAKRPK-----------RQLLPG 406
Query: 244 SWTCPECNNLNYPFRTACNRKGCGSSRPAAAT 275
W CPECN LNY AC C RPA A
Sbjct: 407 EWECPECNFLNYRRNMACFH--CDCKRPADAI 436
>AT2G17975.1 | chr2:7822238-7823970 REVERSE LENGTH=269
Length = 268
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 196 ENDWICPKCENVNFSFRNSCNMKKCGAPRPSPGSNATPCRKDKDAPE-GSWTCPECNNLN 254
E DW C C N N++FR+ CN +C PR +N +P K P G W C C N N
Sbjct: 6 EGDWECLGCRNRNYAFRSFCN--RCKQPRLIMDNNTSP--NSKWLPRIGDWICTGCTNNN 61
Query: 255 YPFRTACNRKGCGSSRPAAATA 276
Y R C K CG S+ AA +
Sbjct: 62 YASREKC--KKCGQSKEVAALS 81
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.137 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,473,508
Number of extensions: 297183
Number of successful extensions: 1164
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 12
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)