BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0490600 Os07g0490600|AK101803
         (277 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0490600  Similar to Type II membrane protein                 447   e-126
Os08g0521400  Zinc finger, RanBP2-type domain containing pro...   122   2e-28

>Os07g0490600 Similar to Type II membrane protein
          Length = 277

 Score =  447 bits (1149), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/277 (83%), Positives = 231/277 (83%)

Query: 1   MASAKVENRXXXXXXSKRSRNDVSVREGDWTCPQCGNVNFSFRNVCNRGACGXXXXXXXX 60
           MASAKVENR      SKRSRNDVSVREGDWTCPQCGNVNFSFRNVCNRGACG        
Sbjct: 1   MASAKVENRGGGGFGSKRSRNDVSVREGDWTCPQCGNVNFSFRNVCNRGACGAPRPSPSL 60

Query: 61  XXXXXXXXXXGYDRPHLGYDRPHLFYGSAGTPPPIPLGSGSYGAPYPHLGLRYGYGPPVG 120
                     GYDRPHLGYDRPHLFYGSAGTPPPIPLGSGSYGAPYPHLGLRYGYGPPVG
Sbjct: 61  SPRVPPPPAAGYDRPHLGYDRPHLFYGSAGTPPPIPLGSGSYGAPYPHLGLRYGYGPPVG 120

Query: 121 PPASYGLFXXXXXXXXXXXXXXXXXXXXXXELGRYGYGFRGSPMPVSSPWSGGALVENND 180
           PPASYGLF                      ELGRYGYGFRGSPMPVSSPWSGGALVENND
Sbjct: 121 PPASYGLFSSYGQPGPMGSPMGGMGYGPGPELGRYGYGFRGSPMPVSSPWSGGALVENND 180

Query: 181 SSASRKRRGGPDGMAENDWICPKCENVNFSFRNSCNMKKCGAPRPSPGSNATPCRKDKDA 240
           SSASRKRRGGPDGMAENDWICPKCENVNFSFRNSCNMKKCGAPRPSPGSNATPCRKDKDA
Sbjct: 181 SSASRKRRGGPDGMAENDWICPKCENVNFSFRNSCNMKKCGAPRPSPGSNATPCRKDKDA 240

Query: 241 PEGSWTCPECNNLNYPFRTACNRKGCGSSRPAAATAN 277
           PEGSWTCPECNNLNYPFRTACNRKGCGSSRPAAATAN
Sbjct: 241 PEGSWTCPECNNLNYPFRTACNRKGCGSSRPAAATAN 277



>Os08g0521400 Zinc finger, RanBP2-type domain containing protein
          Length = 347

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 120/294 (40%), Gaps = 47/294 (15%)

Query: 3   SAKVENRXXXXXXSKRSRNDVSVREGDWTCPQCGNVNFSFRNVCNRGACGXXXXXXXXXX 62
           S++V+NR       KR+R D   RE DW CP C NVNF+FR  CN   C           
Sbjct: 2   SSQVDNRSQSA--GKRARTDGGRREDDWVCPSCQNVNFAFRTTCNMRNCNQSRPTDYTKD 59

Query: 63  XXXXXXXXGYDRPHLGYDRPHLFYGSAGTPPPIPLGSGS-------YGAP-YPHLGL--- 111
                       P  G       Y S GTPP + LG G+       YG P  P  G+   
Sbjct: 60  MQKPMQTPPPHFPMSG------GYMSPGTPPSMYLGGGAPPYGTSLYGGPALPRYGIAQF 113

Query: 112 ------------RYGYGPPVGPPASYGLFXXXXXXXXXXXXXXXXXXXXXXELGRYGYGF 159
                       R   G P GPP                             + RY  G 
Sbjct: 114 PGGSGYPYGYGGRLPMGSPYGPPMHMA------GPPYSAGSMMGPGGMYGMPMDRYSLGL 167

Query: 160 RGSPMPVSSPWSGGALVENNDSSASRKRRGGPDGMAENDWICPKCENVNFSFRNSCNMKK 219
              P P+      GA   +     S+K+  G     +NDW CP C N+NF+FR  CNM+K
Sbjct: 168 PAGPGPM------GARAGSYSEEGSQKKPAG--AGRDNDWKCPNCNNINFAFRTVCNMRK 219

Query: 220 CGAPRPS-PGSNATPCRKDK-DAPEGSWTCPECNNLNYPFRTACNRKGCGSSRP 271
           C  PRP   GS     R  K   PEGSW C +CNN+NYPFRT CNR  C + +P
Sbjct: 220 CNTPRPENQGSKPDGARGPKPKMPEGSWKCEKCNNINYPFRTKCNRPSCEAEKP 273



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.137    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,302,591
Number of extensions: 561895
Number of successful extensions: 2066
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2050
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 178
Effective length of database: 11,866,615
Effective search space: 2112257470
Effective search space used: 2112257470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)