Os07g0479200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SL15-like (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os07g0479200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to SL15-like (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.78 | 0.204 | 11.2 | -0.173 | 0.251 | 0.466 | -0.479 | -2.21 | -0.118 | 5.36 | 19.29 | 1858 | -- | -- |
| 22.5 | 0.221 | 11.1 | 0.402 | 0.21 | 0.41 | -0.335 | -- | 0.0489 | 5.23 | 14.8 | 6919 | -- | -- |
| 19.12 | 0.204 | 11.1 | -0.0945 | 0.207 | 0.438 | -- | -1.99 | -0.0988 | 4.63 | 17.67 | 1459 | -- | -- |
| 22.52 | 0.221 | 11.1 | 0.303 | 0.217 | 0.532 | -- | -- | -0.00737 | 4.95 | 11.26 | 7717 | -- | -- |
| 21.03 | 0.214 | 11.1 | -0.0864 | -- | 0.5 | -- | -2.01 | -0.092 | -- | 17.5 | 1293 | -- | -- |
| 26.58 | 0.242 | 11.1 | 0.575 | 0.221 | -- | -0.366 | -- | 0.135 | 4.91 | -- | -- | -- | -- |
| 26.91 | 0.243 | 11.1 | 0.576 | 0.219 | -- | -- | -- | 0.137 | 4.59 | -- | -- | -- | -- |
| 24.66 | 0.231 | 11.1 | 0.298 | -- | 0.538 | -- | -- | -0.0165 | -- | 9.721 | 8422 | -- | -- |
| 23.95 | 0.228 | 11.1 | -- | 0.214 | 0.666 | -- | -- | -0.094 | 4.75 | 10.8 | 10775 | -- | -- |
| 29.46 | 0.254 | 11.1 | 0.584 | -- | -- | -- | -- | 0.142 | -- | -- | -- | -- | -- |
| 35.64 | 0.279 | 11.1 | -- | 0.229 | -- | -- | -- | 0.0725 | 4.53 | -- | -- | -- | -- |
| 26.06 | 0.238 | 11.1 | -- | -- | 0.681 | -- | -- | -0.0972 | -- | 9.91 | 11211 | -- | -- |
| 38.45 | 0.289 | 11.1 | -- | -- | -- | -- | -- | 0.0775 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 18.23 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 13 | 18.27 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 14 | 18.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 15 | 18.48 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 31 | 18.61 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 41 | 18.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 52 | 18.66 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 69 | 18.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 83 | 18.70 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 98 | 18.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 112 | 18.72 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 151 | 18.75 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 161 | 18.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 162 | 18.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 166 | 18.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 177 | 18.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 182 | 18.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 199 | 18.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 206 | 18.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 229 | 18.80 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 298 | 18.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 346 | 18.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 372 | 18.90 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 416 | 18.92 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 434 | 18.93 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 435 | 18.93 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 467 | 18.95 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 498 | 18.97 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 517 | 18.98 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 535 | 18.99 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 560 | 19.00 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 601 | 19.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 621 | 19.03 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 654 | 19.04 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 655 | 19.04 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 658 | 19.04 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 676 | 19.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 681 | 19.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 692 | 19.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 722 | 19.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 737 | 19.07 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 740 | 19.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 796 | 19.09 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 828 | 19.10 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 832 | 19.10 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 859 | 19.11 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 15 |
| 868 | 19.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 897 | 19.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 898 | 19.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 977 | 19.14 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 13 |